Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2 125 6e-24 seq1 109 5e-19 >seq2 Length=1435055 Score = 125 bits (138), Expect = 6e-24 Identities = 155/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 118529 CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587 ||||||| || | || |||||||| || ||||||||||| || || || ||||| Sbjct 394611 CACCAAGATGCAGAGTCGACTCTTTCTGTATGTTGTAATCTGACAATGTTCGGCCATCCT 394670 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | ||||| || || || |||| ||||| || ||||| ||||| || |||||||| || Sbjct 394671 CAAGCTGCTTGCCTGCAAAGATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCCT 394730 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| ||| || || | |||| |||||| | | ||||| |||| ||| | ||| | Sbjct 394731 GAATCTTTGCCTTGACATTATCGATGGTGTCAGAGGATTCGACTTCGAGGGTGATCGTCT 394790 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| ||| || || ||||||||||| Sbjct 394791 TGCCCGTCAAAGTCTTGACGAAAATCTGCAT 394821 Score = 122 bits (134), Expect = 8e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | |||||| || || ||||| ||||| ||| | |||||| ||||||||| || Sbjct 394846 GTGAAGTGTAGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGGCCATCCTCGAGTTG 394905 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| |||||| |||| ||||| || || || ||||| ||||||||||| || ||| || Sbjct 394906 TTTGCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGGATGCCCTCCTTATCCTGAATCTT 394965 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | ||| || | ||||||||||| || | || ||||| || Sbjct 394966 CGCCTTGACATTGTCAATGGTATCTGATGACTCGACCTCGAGAGTGATAGTCTTGCCAGT 395025 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || |||||||||||| Sbjct 395026 AAGAGTCTTGACGAAAATCTGCATG 395050 >seq1 Length=1986796 Score = 109 bits (120), Expect = 5e-19 Identities = 151/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 118530 ACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| || |||||||| ||||| ||||| || | ||||| ||| || Sbjct 634525 ACCAAGATGGAGGGTGGACTCTTTCTGAATATTGTAGTCTGAGAGGGTGCGACCATCTTC 634584 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| | ||||| ||||||||||| ||||| |||||||| Sbjct 634585 GAGCTGCTTCCCGGCGAAGATCAAGCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCCTG 634644 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || | || | ||| || | ||||||||||| || | || || Sbjct 634645 GATTTTGGCCTTGACGTTATCAATGGTATCGGACGACTCGACCTCGAGAGTAATGGTCTT 634704 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||| || ||||| || ||||| Sbjct 634705 TCCGGTCAAAGTCTTGACAAAGATTTGCAT 634734 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || ||||||||||| || |||||| || || ||||||||||| Sbjct 634259 GTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTGCGACCGTCTTCAAGCTGTTTTCCG 634318 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | || || || || ||||| |||||||||||||| ||||| || Sbjct 634319 GCAAAGATCAAGCGTTGTTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATTTTCGCCTTG 634378 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | || ||||||| || | || ||||| ||||| || Sbjct 634379 ACATTATCAATCGTGTCGGAAGATTCAACCTCGAGCGTGATGGTCTTGCCCGTCAGCGTC 634438 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 634439 TTGACAAAAATTTGCAT 634455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433821136636384