Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3 141 9e-29 >seq3 Length=1746238 Score = 141 bits (156), Expect = 9e-29 Identities = 370/560 (66%), Gaps = 7/560 (1%) Strand=Plus/Plus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 |||||| || || |||| || || || | ||| || | ||| ||||| || || | Sbjct 1247214 ACAAGCGAAGTCGGTGTGCATACCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAA 1247273 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 || ||||| || || || || || | |||||| || | ||||| || || |||||||| Sbjct 1247274 GCCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAA 1247333 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 || ||||| || || |||||||| |||||||| || || | || || || Sbjct 1247334 GATGCCTTCCACAGCTGCAAATGCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGA 1247393 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 |||||| || ||||| | || || | || | |||| ||| |||| || |||| Sbjct 1247394 TATCCACTTGAGGGCCCATTCAGCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATC 1247453 Query 16474 AAATAAATAAtttttttCTTTGCTA--TCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 ||| | ||| | ||| ||| || || ||||| ||||| || | | ||| Sbjct 1247454 AAAAAGATACTCGCGTTCA--GCTTGGTCCTTGATGTAAGTGTCTATGAGGAGAGAGTAC 1247511 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591 |||| |||||||| || ||||| || ||||||||||| ||||| | |||||| | Sbjct 1247512 GTTTCGGAATGAATGTTTTCCATCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCG 1247571 Query 16592 ATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCT 16651 || ||||| | |||| | ||| | | ||||||||| || || |||||| ||| Sbjct 1247572 GCCTGAACTTCGTTGGAAAAGCGTTCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCA 1247631 Query 16652 GCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGA-AAGTTTTAAC 16708 |||||||| || | | || ||||| | || || || ||| ||| | Sbjct 1247632 GCAAAAAAGGCCAAAACATGCGAGATAAAGTGGCGCTCATTGTCATTGAGGCGTTCATTC 1247691 Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768 || || | | ||||| || | ||| | ||| || | ||||| || || || | ||| Sbjct 1247692 CAATCGTATATGTCTTTGGAAAGATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTGCC 1247751 Query 16769 TTTTTATACATTTTCCATAT 16788 ||||| ||||| | |||||| Sbjct 1247752 TTTTTGTACATCTGCCATAT 1247771 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 15958 AACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAA 16017 ||| | |||||||||||| || |||||||||| | || || | ||||| |||||||| Sbjct 1249807 AACCCGCTTTTCAAAGAAGTTGGTTTTTCCTTGCATAGATATCATGTCCATGAAATCAAA 1249748 Query 16018 AGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAA-TCTATCCGCCA 16076 || ||| ||||| |||||||||| | |||| | | |||| || || ||| || | Sbjct 1249747 GGGGTTTGGCGAACAGTAGTATTTATTGTTTCCC-AGAGCGACAAGAAGTCGATCTGCAA 1249689 Query 16077 CAAATTCTATATACTG 16092 ||||||| |||||||| Sbjct 1249688 CAAATTCAATATACTG 1249673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462501870987200