Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 129 5e-25 seq2 82.4 6e-11 >seq1 Length=1986796 Score = 129 bits (142), Expect = 5e-25 Identities = 156/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| || || ||| ||||||||||| |||||||| ||| |||| |||| | Sbjct 634817 TACCAAGATGAAGGGTGGATTCCTTCTGAATATTGTAGTCTGAAAGTGTGCGACCGTCTT 634876 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | ||||| || ||||| || ||||| |||||||||||||| || | || |||||||| Sbjct 634877 CAAGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCGGGGGGGATCCCTTCCTTGTCTT 634936 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 || || || || | | | | || | ||||||||||| |||||| |||| Sbjct 634937 GGATCTTGGCTTTGACATTGTCAATGGTATCAGAAGACTCCACCTCCAGGGTAATGGTCT 634996 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| |||| |||||| |||||||||||||| Sbjct 634997 TGCCAGTCAAAGTCTTTACAAAGATTTGCAT 635027 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||||||| ||| ||||| |||||||| || ||| |||| |||| || || ||| Sbjct 634253 TGCAGCGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTGCGACCGTCTTCAAGCTGT 634312 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 |||||||| || ||||| || |||||||| ||||| | |||||||||||| ||||| Sbjct 634313 TTTCCGGCAAAGATCAAGCGTTGTTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATTTTC 634372 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | |||| | || ||||| | || || |||||||||||| Sbjct 634373 GCCTTGACATTATCAATCGTGTCGGAAGATTCAACCTCGAGCGTGATGGTCTTGCCCGTC 634432 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| |||||||| Sbjct 634433 AGCGTCTTGACAAAAATTTGCAT 634455 Score = 114 bits (126), Expect = 1e-20 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 45117 TCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGC 45176 ||||||||| ||| |||| ||||||||||||||| ||||||||||| || | Sbjct 634010 TCAATCTTAC--CCAGATGCAACGTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGCGTCC 634067 Query 45177 GATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCT 45236 |||| || || || || || || || |||| ||||| ||||| || || | || | Sbjct 634068 TCCCGTCTTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGCGGAATCCCTT 634127 Query 45237 CCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACG 45295 |||||||| ||| ||| ||| || | | || | ||||| |||||| |||| Sbjct 634128 CCTTGTCCTGAATCTTTGCCTTCAC-GTTGTCAATCGTGTCCGATGACTCCACTTCCAAC 634186 Query 45296 GTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||||||||| ||||| |||||||| || || ||||| Sbjct 634187 GTAATCGTCTTGCCGGTCAGCGTCTTCACGAAAATCTGCAT 634227 >seq2 Length=1435055 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| ||||| || ||| ||||| |||||||| || || | || | || || Sbjct 394612 ACCAAGATGCAGAGTCGACTCTTTCTGTATGTTGTAATCTGACAATGTTCGGCCATCCTC 394671 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || || || || |||| || ||||| || ||||| | ||||||||| ||| Sbjct 394672 AAGCTGCTTGCCTGCAAAGATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCCTG 394731 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| ||| ||| || | | | |||| || || || | ||| |||||||| Sbjct 394732 AATCTTTGCCTTGACATTATCGATGGTGTCAGAGGATTCGACTTCGAGGGTGATCGTCTT 394791 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| |||||| || || || ||||| Sbjct 394792 GCCCGTCAAAGTCTTGACGAAAATCTGCAT 394821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395066764156792