Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3 170 2e-37 >seq3 Length=1746238 Score = 170 bits (188), Expect = 2e-37 Identities = 362/538 (67%), Gaps = 7/538 (1%) Strand=Plus/Plus Query 14225 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 14284 |||||||| | ||| ||||| || ||||| || ||||| || ||||||| || || || Sbjct 1247236 CCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAAGCCAGGCATCAGACCACGCTTC 1247295 Query 14285 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14344 || | |||||| |||| || || || || |||||||| || || || || || ||||| Sbjct 1247296 TTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAAGATGCCTTCCACAGCTGCAAAT 1247355 Query 14345 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14404 || | |||||||| | || | | || |||| |||||||| || ||||||||| Sbjct 1247356 GCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGATATCCACTTGAGGGCCCATTCA 1247415 Query 14405 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCC--TTCTCTT 14462 | || || ||| | || || || || |||| ||| | || || ||| | Sbjct 1247416 GCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATCAAAAAGATACTCGCGTTCAGCT 1247475 Query 14463 TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCA 14522 | || ||||| |||| || || || || | ||| |||| || || |||||||||| Sbjct 1247476 TGGTCCTTGA--TGTAAGTGTCTATGAGGAGAGAGTACGTTTCGGAATGAATGTTTTCCA 1247533 Query 14523 TAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATC 14582 | || ||||||||||| || || | |||||| | || || || | |||| | Sbjct 1247534 TCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGCCTGAACTTCGTTGGAAAAGC 1247593 Query 14583 TTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTT 14642 |||| | | ||||| || || || ||||| ||| |||||||| ||||| | | Sbjct 1247594 GTTCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGCAAAAAAGGCCAAAACATGCG 1247653 Query 14643 TAATAAAGTATTGCTC---TTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAA 14699 ||||||| |||| |||||| | ||| ||||||||| || || || |||| Sbjct 1247654 AGATAAAGTGGCGCTCATTGTCATTGAGGCGTTCATTCCAATCGTATATGTCTTTGGAAA 1247713 Query 14700 GATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATAT 14757 |||| | || || | ||||| || || | || ||||| ||||| |||||| Sbjct 1247714 GATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTGCCTTTTTGTACATCTGCCATAT 1247771 Score = 122 bits (134), Expect = 8e-23 Identities = 347/528 (66%), Gaps = 9/528 (2%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| |||||||| ||||||||||| || | || || ||||| || || || || | Sbjct 1249477 ACATGCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAGAACGTAAG 1249418 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 || ||||| ||||| || || || | ||| || || ||||| || || || || || || Sbjct 1249417 ACCAGGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCAGAGAAAAA 1249358 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 || || || || || || || || | | |||||| |||| | | | || | ||| Sbjct 1249357 GATCCCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAGTGGACTGTTGATCCGA 1249298 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT- 14441 ||||||| | |||||| |||| ||| |||| | | || ||||| || || | Sbjct 1249297 TATCCATCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTTTCGATGGCGTC 1249238 Query 14442 -TAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 ||| | ||| | |||| | | |||| ||||| ||||| |||||||| ||| Sbjct 1249237 GAAAAGATGTGTGCGTTCTTCTGGATCCTTG--ATGTAGGTATCGATAAGTAAAGAGTAC 1249180 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 |||| ||||| | |||||||| || || || || || || || | || || | | Sbjct 1249179 GTTTCCGAGTGAACATTTTCCATCATAATTTGGAAGCCGTAGAAGCAACGTGCCTCAG-C 1249121 Query 14561 CAT-TGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14619 || |||| || |||| || || | ||| ||||| || || || || ||| Sbjct 1249120 TATCTGTATTTCACTAGAAAACCTCTCAAGGAGATTCTCATTCACGATGCCGTCGGAAGC 1249061 Query 14620 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTT---TTT 14676 ||||||||||| | | || ||| || ||| | || | | | ||||| || Sbjct 1249060 AGCAAAAAATGCGAGGACGTGGGAAATGAAATATCGTTCGTTGGAGTTAAGTTTATAGTT 1249001 Query 14677 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 |||||| | ||| | | | ||||||| ||| || |||||||||| Sbjct 1249000 CCAATCCATGAGATCATGACAGAGATCTATTTCTTCGGCTGTCCAAAA 1248953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482335036631360