Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 183 3e-41 seq1 125 6e-24 seq2 100 3e-16 >seq3 Length=1746238 Score = 183 bits (202), Expect = 3e-41 Identities = 386/571 (68%), Gaps = 25/571 (4%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | ||||||||||||||||||||||| || ||||| | ||| || | || || Sbjct 1247771 ATATGGCAGATGTACAAAAAGGCAGAAGCATCCTTCTGGACGGCCGAGGAGATGGATCTT 1247712 Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || || | ||||||| || |||||| || |||| | | ||||| Sbjct 1247711 TCCAAAGACATATACGATTGGAATGAACGCCTCAATGACAATGAGCGCCACTTTATCTCG 1247652 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || ||||| ||||| || || |||||||| || || ||||| || | |||||| | Sbjct 1247651 CATGTTTTGGCCTTTTTTGCTGCTTCCGATGGCATCGTCAACGAAAACCTTGTCGAACGC 1247592 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||||| | ||||| || | | || || | ||||| || || |||||| | || Sbjct 1247591 TTTTCCAACGAAGTTCAGGCCGCTGAAGCTCGCTGCTTCTATGGTTTTCAAATCATGATG 1247532 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG-- 57864 |||||| | ||||| |||| ||| || || ||||| || || ||| | |||||| | | Sbjct 1247531 GAAAACATTCATTCCGAAACGTACTCTCTCCTCATAGACACTTACATCAAGGACCAAGCT 1247472 Query 57865 --ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AA 57919 ||| || ||| || || | || ||||| || || ||| || |||| || Sbjct 1247471 GAACGCGA---GTA-TCTTTTTGATGCCATCGAGACCATCCCCTGTAT---CAAGCGTAA 1247419 Query 57920 GGCAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGAGAGGC 57975 ||| || ||| | |||| |||||| | ||| | | || |||||||| | Sbjct 1247418 GGCTGAATGGGCCCTCAAGTGGATATCTGACAAG----AACTCTACATTCGCCGAACGAT 1247363 Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTT 58035 | |||| || || || || ||||| || |||||||| ||| |||||| |||| |||| Sbjct 1247362 TGGTCGCATTTGCAGCTGTGGAAGGCATCTTCTTTTCAGGCTCCTTTGCATCAATCTTTT 1247303 Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCG 58095 || | ||||| || || |||||||| ||| | || || || ||| | || || | Sbjct 1247302 GGCTCAAGAAGCGTGGTCTGATGCCTGGCTTAACCTTCTCAAATGAGCTTATCAGTCGTG 1247243 Query 58096 ACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 | |||||| | || || || || || || || Sbjct 1247242 ATGAGGGTATGCACACCGACTTCGCTTGTCT 1247212 >seq1 Length=1986796 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| ||||| ||||| || ||||| |||| |||||| | ||| Sbjct 634455 ATGCAAATTTTTGTCAAGACGCTGACGGGCAAGACCATCACGCTCGAGGTTGAATCTTCC 634396 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || ||| ||||||||| ||| | || || ||||| Sbjct 634395 GACACGATTGATAATGTCAAGGCGAAAATCCAGGACAAGGAGGGCATTCCTCCTGACCAA 634336 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || || || || |||||| | |||||| | ||| || ||||| ||| Sbjct 634335 CAACGCTTGATCTTTGCCGGAAAACAGCTTGAAGACGGTCGCACTCTGTCTGATTACAAC 634276 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| ||||| || ||||| || || | ||| | || |||| Sbjct 634275 ATCCAGAAAGAGTCGACGCTGCATCTCGTTCTGCGTCTGCGCGGGGGTA 634227 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/214 (70%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||||||| |||| ||||| || || ||| | || || || | || Sbjct 635027 ATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTCT 634968 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | |||||| | || ||||||||||| | || |||||||| Sbjct 634967 GATACCATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCCCCCGACCAA 634908 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 |||||| | || || || ||||| || | |||||| || ||| | | || || | Sbjct 634907 CAGCGTTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACACTTTCA--GACTACA 634850 Query 31371 ACATTCAAAAAGAATCGACTCTTCATC-TGGTAC 31403 | ||||| || ||||| || ||||||| |||||| Sbjct 634849 ATATTCAGAAGGAATCCACCCTTCATCTTGGTAC 634816 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||| ||||| ||||| || | || || || | || Sbjct 634227 ATGCAGATTTTCGTGAAGACGCTGACCGGCAAGACGATTACGTTGGAAGTGGAGTCATCG 634168 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || || ||| | |||||||||||| | ||||| ||||| Sbjct 634167 GACACGATTGACAACGTGAAGGCAAAGATTCA-GGACAAGGAAGGGATTCCGCCTGACCA 634109 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| || || || || ||||| ||| | |||||| Sbjct 634108 GCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAAGAC 634072 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||| |||| || || || || || |||| || || ||||| Sbjct 634734 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACTCTCGAGGTCGAGTCGTCC 634675 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | ||| ||||||||||||| | || ||||| || Sbjct 634674 GATACCATTGATAACGTCAAGGCCAAAATCCAGGACAAGGAAGGCATCCCTCCCGATCAA 634615 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| || || ||| | ||||| | || | || || || Sbjct 634614 CAGCGCTTGATCTTCGCCGGGAAGCAGCTCGAAGATGGTCGCACCCTCTCAGACTACAAT 634555 Query 31373 ATTCAAAAAGAATCGACTCTTCATC-TGGTACTTA 31406 ||||| ||||| || || || |||| |||||| || Sbjct 634554 ATTCAGAAAGAGTCCACCCTCCATCTTGGTACGTA 634520 >seq2 Length=1435055 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| |||||||| || ||||| || ||||| |||| || || | || Sbjct 395050 CATGCAGATTTTCGTCAAGACTCTTACTGGCAAGACTATCACTCTCGAGGTCGAGTCATC 394991 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | ||||| || || ||| ||||| ||| | || || ||||| Sbjct 394990 AGATACCATTGACAATGTCAAGGCGAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCA 394931 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || |||||||||||||| | || || ||| | ||| || || Sbjct 394930 ACAACGTCTTATCTTCGCTGGCAAACAACTCGAGGATGGCCGCACTCTCTCCGACTACAA 394871 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || ||||| || || ||| | || || || |||| Sbjct 394870 TATTCAGAAGGAATCTACACTTCACCTTGTCCTTCGGCTCAGAGGAGGTA 394821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756637715840