Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq21 111 3e-19 seq3 84.2 4e-11 >seq21 Length=1130388 Score = 111 bits (122), Expect = 3e-19 Identities = 184/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 94779 GTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATA 94838 || || ||| | ||||||||||||||| || || || || ||| || |||||||| Sbjct 174776 GTTGAGGCCAATACCTCCAGCAGTCTTGCTAATCATGGCACACTGCTTGAGGGTATCATA 174717 Query 94839 AATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG-GGGTG 94897 ||||| || || ||| || | | | | |||||| |||||| |||||| ||||| Sbjct 174716 GATACCATCGATTGAATCGTCCTTCATACAGACAAGGAAACACGAGCTAAGTTGTGGGTG 174657 Query 94898 TGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGA 94957 | ||| || ||| || ||||| || || ||||| || || ||| || ||||| | Sbjct 174656 -GGGTGTACCGGCATTGAAGAGTGTAGGCGAGGCATGTGTGAAGTAGCGCTCAGACATAA 174598 Query 94958 GATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCA 95017 | | ||| || || | ||| | ||||| || |||||||| || || ||||||| Sbjct 174597 GGTTATACGTCTCGAGGACGCGATCAATGTCATCACCATGAATGCCAACCGCAACACGCA 174538 Query 95018 TAATCATGTCCTGAGGGCGCTCA 95040 | ||||||| ||||| |||||| Sbjct 174537 TGATCATGTGTTGAGGACGCTCA 174515 >seq3 Length=1746238 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 101902 TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATT 101961 ||| || |||| | | ||||| || || || || ||||| ||||| || ||| | || Sbjct 1249315 TTTTGCTGAACGACTCGTTGCTTTCGCCGCTGTAGAAGGGATCTTTTTCTCTGGGTCTTT 1249374 Query 101962 CGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || | || |||||||||||||| |||| | |||||||||| || | ||||||||| Sbjct 1249375 TGCTGCTATCTTCTGGATCAAGAAGCGGGGATTAATGCCTGGTCTTACGTTCTCCAATGA 1249434 Query 102022 GTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 |||| | ||||| || ||||| || |||||||| || |||| Sbjct 1249435 ACTCATCAGCCGCGACGAGGGCCTTCACACGGATTTTGCATGTCTGTTGTT 1249485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989561786313160