Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 212 8e-50 >seq3 Length=1746238 Score = 212 bits (234), Expect = 8e-50 Identities = 393/569 (69%), Gaps = 12/569 (2%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || |||||| ||||| ||| || |||||||| | || || | ||| || || Sbjct 1249485 AACAACAGACATGCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAG 1249426 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 ||||| || || ||||||| || ||||| || | ||| || || | ||| || || || Sbjct 1249425 AACGTAAGACCAGGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCA 1249366 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GC 33750 || || ||||| |||||||| || || || |||| |||| || || || || | Sbjct 1249365 GAGAAAAAGATCCCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAGTGGACTGT 1249306 Query 33751 TG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 || || |||||| | |||||||||| || || || ||||| | || ||||| Sbjct 1249305 TGATCCGATATCCATCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTTTCG 1249246 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAA 33867 ||||| | || |||| | ||| | ||| || | || |||||||| | ||| Sbjct 1249245 ATGGCGTCGAAAAGATGTGTGCGTTCTTCTGGATCCTTGATGTAGGTATCGATAAGTAAA 1249186 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 || || | ||||||| |||| ||||| || || || || |||||||| || | | Sbjct 1249185 GAGTA--CGTTTCCGAGTGAACATTTTCCATCATAATTTGGAAGCCGTAGAAGCAACGTG 1249128 Query 33928 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT 33987 |||| | ||||| | ||| || |||| | || | ||| |||||||| || || | Sbjct 1249127 CCTCAGCTATCTGTATTTCACTAGAAAACCTCTCAAGGAGATTCTCATTCACGATGCCGT 1249068 Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA-GT 34046 | || |||||||| || | || || || |||||| ||||| ||| |||| || Sbjct 1249067 CGGAAGCAGCAAAAAATGCGAGGACGTGGGAAATGAAATATCGTTCGT-TGGAGTTAAGT 1249009 Query 34047 TTAT---TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 34103 |||| ||||||| ||| ||| | | | | ||| | |||||| |||||||||||||| Sbjct 1249008 TTATAGTTCCAATCCATGAGATCATGACAGAGATCTATTTCTTCGGCTGTCCAAAATGAT 1248949 Query 34104 GCCTCTGCCTTTTTATACATATTCCAGAT 34132 |||| ||||| |||||| | |||||| || Sbjct 1248948 GCCTGTGCCTGTTTATAAAAATTCCATAT 1248920 Score = 190 bits (210), Expect = 3e-43 Identities = 380/559 (68%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| ||||| ||| ||||| |||||| || | ||| || | || || || || || | Sbjct 1247214 ACAAGCGAAGTCGGTGTGCATACCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAA 1247273 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || |||||||| || |||||||| || || || || || || |||||||| Sbjct 1247274 GCCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAA 1247333 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33757 ||| ||||| || || ||||| || | | || || | | | | | |||| Sbjct 1247334 GATGCCTTCCACAGCTGCAAATGCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGA 1247393 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||||||| | ||||| || ||||| || | ||| || || || || ||||||| Sbjct 1247394 TATCCACTTGAGGGCCCATTCAGCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATC 1247453 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||| ||||| | |||| || || | ||||| || || | ||| ||| | Sbjct 1247454 AAAAAGATACTCGCGTTCAGCTTGGTCCTTGATGTAAGTGTCTATGAGGAGAGAGTACGT 1247513 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||| |||||||||||||| || || ||||| || ||||| || | ||| || | Sbjct 1247514 TTCGGAATGAATGTTTTCCATCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGC 1247573 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| ||||| | |||| ||||| | | ||||| || || || ||||| || || Sbjct 1247574 CTGAACTTCGTTGGAAAAGCGTTCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGC 1247633 Query 33998 AAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTC-TGGTGTTAGTTTATTCC 34053 |||||| ||||| ||||| ||||| | | | ||| | | | ||| ||||| Sbjct 1247634 AAAAAAGGCCAAAACATGCGAGATAAAGTGGCGCTCATTGTCATTGAG-GCGTTCATTCC 1247692 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 |||| | || ||||| || | ||||| || || | ||||| || ||||| ||||||| Sbjct 1247693 AATCGTATATGTCTTTGGAAAGATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTGCCT 1247752 Query 34114 TTTTATACATATTCCAGAT 34132 |||| ||||| | ||| || Sbjct 1247753 TTTTGTACATCTGCCATAT 1247771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629803806994560