Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3 165 8e-36 >seq3 Length=1746238 Score = 165 bits (182), Expect = 8e-36 Identities = 380/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| | ||| |||||||| || | || ||||| | || || |||||||| || Sbjct 1249485 AACAACAGACATGCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAG 1249426 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || || | || ||||| ||||| || || || ||||| || ||||||||||| || ||| Sbjct 1249425 AACGTAAGACCAGGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCA 1249366 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGT 11798 || || || || || || ||||| || || || || | || ||| || | | ||| Sbjct 1249365 GAGAAAAAGATCCCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAGTGGACTGT 1249306 Query 11799 TGCT-AGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCT 11857 || | ||||||||| | |||||||||||||| || || ||| || ||||| Sbjct 1249305 TGATCCGATATCCATCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTTTCG 1249246 Query 11858 ATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917 || |||| || | ||| | |||| ||| | | || ||||| || | |||| Sbjct 1249245 ATGGCGTCGAAAAGATGTGTGCGTTCTTCTGGATCCTTGATGTAGGTATCGATAAGTAAA 1249186 Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977 ||| |||| || |||| ||||||||| ||||| || || ||||| || |||||| Sbjct 1249185 GAGTACGTTTCCGAGTGAACATTTTCCATCATAATTTGGAAGCCGTAGAAGCAACGTGCC 1249126 Query 11978 TCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 || | ||||| || | |||| || || | ||||||||| || || || || Sbjct 1249125 TCAGCTATCTGTATTTCACTAGAAAACCTCTCAAGGAGATTCTCATTCACGATGCCGTCG 1249066 Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA-TTT 12096 || ||||||||||| || | || || || ||| ||||| | |||||| ||| Sbjct 1249065 GAAGCAGCAAAAAATGCGAGGACGTGGGAAATGAAATATCGTTCGT-TGGAGTTAAGTTT 1249007 Query 12097 A---TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGC 12153 | | |||||| | ||| | | | ||||| |||||| | |||||||| ||| Sbjct 1249006 ATAGTTCCAATCCATGAGATCATGACAGAGATCTATTTCTTCGGCTGTCCAAAATGATGC 1248947 Query 12154 CACTGATTGTTTATACATTTTCCAGAT 12180 | || |||||||| | ||||| || Sbjct 1248946 CTGTGCCTGTTTATAAAAATTCCATAT 1248920 Score = 113 bits (124), Expect = 4e-20 Identities = 226/333 (68%), Gaps = 3/333 (1%) Strand=Plus/Plus Query 11650 ACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttt 11709 ||| || || | ||| || || ||||| || || ||||| || ||||||| || || || Sbjct 1247235 ACCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAAGCCAGGCATCAGACCACGCTT 1247294 Query 11710 ttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAA 11769 || | |||||| || | ||||| || || |||||||| || || |||||||||||||| Sbjct 1247295 CTTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAAGATGCCTTCCACAGCTGCAAA 1247354 Query 11770 TGCTACTACTCTTTCTCC--ATATA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATC 11826 ||| || | || ||| | || || || ||| ||||||||| || |||||| || Sbjct 1247355 TGCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGATATCCACTTGAGGGCCCATTC 1247414 Query 11827 AGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTAT 11886 ||| || || | || || || || || || | ||| | || | ||| Sbjct 1247415 AGCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATCAAAAAGATACTCGCGTTCAGC 1247474 Query 11887 ATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCAT 11946 | || | | || || ||||| | | | ||| |||| |||||||| |||||||| Sbjct 1247475 TTGGTCCTTGATGTAAGTGTCTATGAGGAGAGAGTACGTTTCGGAATGAATGTTTTCCAT 1247534 Query 11947 AGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 |||||||| |||||||| || || || || Sbjct 1247535 CATGATTTGAAAACCATAGAAGCAGCGAGCTTC 1247567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468514539306880