Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3 196 5e-45 >seq3 Length=1746238 Score = 196 bits (216), Expect = 5e-45 Identities = 370/540 (69%), Gaps = 11/540 (2%) Strand=Plus/Plus Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952 |||||||| | ||| ||||| || ||||| || ||||| || ||||||| || || || Sbjct 1247236 CCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAAGCCAGGCATCAGACCACGCTTC 1247295 Query 13953 tttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14012 || | |||||| |||| ||||| || || |||||||| || || || || || ||||| Sbjct 1247296 TTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAAGATGCCTTCCACAGCTGCAAAT 1247355 Query 14013 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14072 || | |||||||| | || | | || |||| |||||||| || ||||||||| Sbjct 1247356 GCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGATATCCACTTGAGGGCCCATTCA 1247415 Query 14073 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCC--TTCTCTT 14130 | || || ||| | || || || || |||| ||| | ||| || ||| | Sbjct 1247416 GCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATCAAAAAGATACTCGCGTTCAGCT 1247475 Query 14131 TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCA 14190 | || ||||| |||| || || || || | ||| |||| || || |||||||||| Sbjct 1247476 TGGTCCTTGA--TGTAAGTGTCTATGAGGAGAGAGTACGTTTCGGAATGAATGTTTTCCA 1247533 Query 14191 TAGCTATCTGAAAACCATAAAAGCATCTAGCTTC--CGACCATTGTACTTCCGAGTAAAA 14248 | || ||||||||||| ||||| | |||||| || || || ||||| | |||| Sbjct 1247534 TCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGCC--TGAACTTCGTTGGAAAA 1247591 Query 14249 TCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTT 14308 | |||| | | ||||| || || || ||||| ||| |||||||| ||||| | | Sbjct 1247592 GCGTTCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGCAAAAAAGGCCAAAACATG 1247651 Query 14309 TTTAATAAAGTATTGCTC---TTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGA 14365 ||||||| |||| |||||| | ||| ||||||||| ||| || || || Sbjct 1247652 CGAGATAAAGTGGCGCTCATTGTCATTGAGGCGTTCATTCCAATCGTATATGTCTTTGGA 1247711 Query 14366 AAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14425 |||||| | || || | ||||| || || | || ||||| ||||| |||||| Sbjct 1247712 AAGATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTGCCTTTTTGTACATCTGCCATAT 1247771 Score = 143 bits (158), Expect = 3e-29 Identities = 354/529 (67%), Gaps = 11/529 (2%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| |||||||| ||||||||||| || | || || ||||| || || || || | Sbjct 1249477 ACATGCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAGAACGTAAG 1249418 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 || ||||| ||||| || || || | ||| || || |||||||| ||||| || || || Sbjct 1249417 ACCAGGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCAGAGAAAAA 1249358 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14050 || || || || || || || || | | |||||| |||| | | | || | ||| Sbjct 1249357 GATCCCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAGTGGACTGTTGATCCGA 1249298 Query 14051 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT- 14109 ||||||| | |||||| |||| ||| |||| | | || ||||| || || | Sbjct 1249297 TATCCATCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTTTCGATGGCGTC 1249238 Query 14110 -TAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 ||| | | | | |||| | | |||| ||||| ||||| |||||||| ||| Sbjct 1249237 GAAAAGATGTGTGCGTTCTTCTGGATCCTTG--ATGTAGGTATCGATAAGTAAAGAGTAC 1249180 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGAC 14228 |||| ||||| | |||||||| || || || || || ||||| | || || | | Sbjct 1249179 GTTTCCGAGTGAACATTTTCCATCATAATTTGGAAGCCGTAGAAGCAACGTGCCTCAG-C 1249121 Query 14229 CAT-TGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 || |||| ||| | || |||| || || | ||| ||||| || || || || || Sbjct 1249120 TATCTGTATTTCACTAG-AAAACCTCTCAAGGAGATTCTCATTCACGATGCCGTCGGAAG 1249062 Query 14287 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT---TT 14343 | ||||||||||| | | || ||| || ||| | || | ||| ||||| | Sbjct 1249061 CAGCAAAAAATGCGAGGACGTGGGAAATGAAATATCGTTCGTTGGAGTTAAGTTTATAGT 1249002 Query 14344 TCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 ||||||| | ||| | | | ||||||| ||| || |||||||||| Sbjct 1249001 TCCAATCCATGAGATCATGACAGAGATCTATTTCTTCGGCTGTCCAAAA 1248953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479717493956800