Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3 161 9e-35 >seq3 Length=1746238 Score = 161 bits (178), Expect = 9e-35 Identities = 360/538 (67%), Gaps = 7/538 (1%) Strand=Plus/Plus Query 13681 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13740 |||||||| | ||| ||||| || ||||| || ||||| || ||||||| || || || Sbjct 1247236 CCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAAGCCAGGCATCAGACCACGCTTC 1247295 Query 13741 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 13800 || | |||||| |||| || || || || |||||||| || || || || || ||||| Sbjct 1247296 TTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAAGATGCCTTCCACAGCTGCAAAT 1247355 Query 13801 GCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCA 13860 || | | |||||| | || | | || |||| |||||||| || ||||||||| Sbjct 1247356 GCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGATATCCACTTGAGGGCCCATTCA 1247415 Query 13861 GAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCC--TTCTCTT 13918 | || || ||| | || || ||||| |||| || | || || ||| | Sbjct 1247416 GCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATCAAAAAGATACTCGCGTTCAGCT 1247475 Query 13919 TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTA 13978 | || ||||| |||| || || || || | ||| |||| || || |||||||| | Sbjct 1247476 TGGTCCTTGA--TGTAAGTGTCTATGAGGAGAGAGTACGTTTCGGAATGAATGTTTTCCA 1247533 Query 13979 TAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATC 14038 | || ||||||||||| || || | |||||| | || || || | |||| | Sbjct 1247534 TCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGCCTGAACTTCGTTGGAAAAGC 1247593 Query 14039 TTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTT 14098 ||| | | |||||| || || || ||||| ||| |||||||| ||||| | | Sbjct 1247594 GTTCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGCAAAAAAGGCCAAAACATGCG 1247653 Query 14099 TAATAAAGTATTGCTC---TTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAA 14155 ||||||| |||| |||||| | ||| ||||||||| || || || |||| Sbjct 1247654 AGATAAAGTGGCGCTCATTGTCATTGAGGCGTTCATTCCAATCGTATATGTCTTTGGAAA 1247713 Query 14156 GATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14213 |||| | || || | ||||| || || | || ||||| ||||| |||||| Sbjct 1247714 GATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTGCCTTTTTGTACATCTGCCATAT 1247771 Score = 131 bits (144), Expect = 2e-25 Identities = 351/529 (66%), Gaps = 11/529 (2%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| |||||||| ||||||||||| || | || || ||||| || || || || | Sbjct 1249477 ACATGCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAGAACGTAAG 1249418 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 || ||||| ||||| || || || | ||| || || ||||| || || || || || || Sbjct 1249417 ACCAGGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCAGAGAAAAA 1249358 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838 || || || || || || || || | |||||||| |||| | | | || | || Sbjct 1249357 GATCCCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAGTGGACTGTTGATCCGA 1249298 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||||| | |||||| |||| ||| |||| | | || |||||||| || | Sbjct 1249297 TATCCATCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTTTCGATGGCGTC 1249238 Query 13899 GAATAAA--TGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 ||| | | ||| | |||| | | |||| ||||| ||||| |||||||| ||| Sbjct 1249237 GAAAAGATGTGTGCGTTCTTCTGGATCCTTG--ATGTAGGTATCGATAAGTAAAGAGTAC 1249180 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 |||| ||||| | ||||| || || || || || || || || | || || | | Sbjct 1249179 GTTTCCGAGTGAACATTTTCCATCATAATTTGGAAGCCGTAGAAGCAACGTGCCTCAG-C 1249121 Query 14017 CAT-TGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 || |||| || | || |||| || || | || ||||| || || || || || Sbjct 1249120 TATCTGTATTTCACTAG-AAAACCTCTCAAGGAGATTCTCATTCACGATGCCGTCGGAAG 1249062 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT---TT 14131 | ||||||||||| | | || ||| || ||| | || | ||| ||||| | Sbjct 1249061 CAGCAAAAAATGCGAGGACGTGGGAAATGAAATATCGTTCGTTGGAGTTAAGTTTATAGT 1249002 Query 14132 TCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 ||||||| | ||| | | | ||||||| ||| || |||||||||| Sbjct 1249001 TCCAATCCATGAGATCATGACAGAGATCTATTTCTTCGGCTGTCCAAAA 1248953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478578318905280