Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 215 7e-51 >seq3 Length=1746238 Score = 215 bits (238), Expect = 7e-51 Identities = 395/570 (69%), Gaps = 14/570 (2%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || |||||| ||||| ||| || ||||| || | || || | ||| ||||| Sbjct 1249485 AACAACAGACATGCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAG 1249426 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 ||||| || || ||||||| || ||||| || | ||| || |||| ||||| || ||| Sbjct 1249425 AACGTAAGACCAGGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCA 1249366 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || || ||||| |||||||| || || || |||| |||| || || || || |||| Sbjct 1249365 GAGAAAAAGATCCCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAGTGG-ACTG 1249307 Query 42236 TC-ATG---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 | || |||||| | |||||||||| || || || ||||| | || ||||| Sbjct 1249306 TTGATCCGATATCCATCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTTTC 1249247 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA--AA 42349 ||||| | || |||| | ||| | ||| || | || |||||||| | || Sbjct 1249246 GATGGCGTCGAAAAGATGTGTGCGTTCTTCTGGATCCTTGATGTAGGTATCGATAAGTAA 1249187 Query 42350 AGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG 42409 ||| || | |||| || |||| ||||| || || || || |||||||| || | Sbjct 1249186 AGAGTA--CGTTTCCGAGTGAACATTTTCCATCATAATTTGGAAGCCGTAGAAGCAACGT 1249129 Query 42410 GCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469 ||||| | | ||||| ||| || |||| | ||| | ||| || ||||| || ||| Sbjct 1249128 GCCTCAGCTATCTGTATTTCACTAGAAAACCTCTCAAGGAGATTCTCATTCACGATGCCG 1249069 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA- 42528 || || |||||||| || | || || || |||||| ||||| || ||||| Sbjct 1249068 TCGGAAGCAGCAAAAAATGCGAGGACGTGGGAAATGAAATATCGTTCGTT-GGAGTTAAG 1249010 Query 42529 TTTAT---TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGA 42585 ||||| ||||||| ||| ||| | | | | ||||| |||||| | ||||||||||| Sbjct 1249009 TTTATAGTTCCAATCCATGAGATCATGACAGAGATCTATTTCTTCGGCTGTCCAAAATGA 1248950 Query 42586 TGCTTCTGCCTTTTTATACATATTCCAGAT 42615 ||| | ||||| |||||| | |||||| || Sbjct 1248949 TGCCTGTGCCTGTTTATAAAAATTCCATAT 1248920 Score = 197 bits (218), Expect = 2e-45 Identities = 381/562 (68%), Gaps = 14/562 (2%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||| ||| ||||| ||||||||| | ||| || | || || || || || | Sbjct 1247214 ACAAGCGAAGTCGGTGTGCATACCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAA 1247273 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| || |||||||| || |||||||| || || ||||| || || |||||||| Sbjct 1247274 GCCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAA 1247333 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATG 42240 ||| ||||| || || ||||| || | | || || | | | | ||||| Sbjct 1247334 GATGCCTTCCACAGCTGCAAATGCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGA 1247393 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||||||| | ||||| || ||||| || | ||| || || || || ||||||| Sbjct 1247394 TATCCACTTGAGGGCCCATTCAGCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATC 1247453 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 ||| ||||| | |||| || || | || || || || | ||| ||| | Sbjct 1247454 AAAAAGATACTCGCGTTCAGCTTGGTCCTTGATGTAAGTGTCTATGAGGAGAGAGTACGT 1247513 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 ||| |||||||||||||| || || ||||| || ||||| || | || || | | Sbjct 1247514 TTCGGAATGAATGTTTTCCATCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGC 1247573 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 ||| ||||| | |||| ||||| | | |||||||| || || || || || || Sbjct 1247574 CTGAACTTCGTTGGAAAAGCGTTCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGC 1247633 Query 42481 AAAAAACGCCAATACATGTTTTATAAAAT-------ATTTTTCGTCCGGTGTTAATTTAT 42533 |||||| ||||| ||||| ||||| | ||| | | || | || || Sbjct 1247634 AAAAAAGGCCAAAACATGCGAGATAAAGTGGCGCTCATTGTCATTGAGGCG----TTCAT 1247689 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||||||| | || ||||| || | ||| | || || ||||||| || |||||||||| Sbjct 1247690 TCCAATCGTATATGTCTTTGGAAAGATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTG 1247749 Query 42594 CCTTTTTATACATATTCCAGAT 42615 ||||||| ||||| | ||| || Sbjct 1247750 CCTTTTTGTACATCTGCCATAT 1247771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671124502051520