Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 212 9e-50 >seq3 Length=1746238 Score = 212 bits (234), Expect = 9e-50 Identities = 357/507 (70%), Gaps = 20/507 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||||||||| | || ||||| ||||||| ||| ||| | ||||| Sbjct 1247771 ATATGGCAGATGTACAAAAAGGCAGAAGCATCCTTCTGGACGGCCGAGGAGATGGATCTT 1247712 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||| ||| | ||||||||| | || | | ||| | |||||| | ||||| ||| Sbjct 1247711 TCCAAAGACATATACGATTGGAATGAACGCCTCAATGACAATGAGCGCCACTTTATCTCG 1247652 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 || |||||||||| ||||| | |||||||| ||||||||||| || | ||| || ||| Sbjct 1247651 CATGTTTTGGCCTTTTTTGCTGCTTCCGATGGCATCGTCAACGAAAACCTTGTCGA-ACG 1247593 Query 125198 ATTCTCTCAAG-AGTTGACCATTCCAGAGGTG-TCG-TGCTTTTACGGATTCCAAATCAT 125254 || || | | |||| || || | | ||| ||||| || || || |||||||| Sbjct 1247592 CTTTTCCAACGAAGTT---CAGGCCGCTGAAGCTCGCTGCTTCTATGGTTTTCAAATCAT 1247536 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| || ||| | || || |||| ||||||| || || |||| ||||| | | Sbjct 1247535 GATGGAAAACATTCATTCCGAAACGTACTCTCTCCTCATAGACACTTACAT---CAAGGA 1247479 Query 125315 GCAACGTAAACACATG---CTCTTTAACGCAATCGACACGGTGCCGTCTAT---ACGTAA 125368 ||| | ||| | | || ||| | || ||||| || | || | ||| ||| Sbjct 1247478 CCAAGCTGAACGCGAGTATCTTTTTGATGCCATCGAGACCATCCCCTGTATCAAGCGT-- 1247421 Query 125369 AAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACT 125428 |||||| |||||| | |||||| |||| | || ||| | | |||||| || | Sbjct 1247420 -AAGGCTGAATGGGCCCTCAAGTGGATATCTGACAAGAACTCTACATTCGCCGAACGATT 1247362 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 ||| ||||| || || || || |||||||||||||| || ||||| | |||||||| Sbjct 1247361 GGTCGCATTTGCAGCTGTGGAAGGCATCTTCTTTTCAGGCTCCTTTGCATCAATCTTTTG 1247302 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGG 125515 |||||||||||| || || ||||| || Sbjct 1247301 GCTCAAGAAGCGTGGTCTGATGCCTGG 1247275 Score = 125 bits (138), Expect = 1e-23 Identities = 378/573 (66%), Gaps = 17/573 (3%) Strand=Plus/Plus Query 125031 TACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTG 125090 || ||| |||| ||||| || |||||||| | |||||| | ||||| | | || || Sbjct 1248932 TATAAACAGGCACAGGCATCATTTTGGACAGCCGAAGAAATAGATCTCTGTCATGATCTC 1248991 Query 125091 TACGATTGGGAGACTCGT-TTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGC 125149 |||||| | | || ||| ||| || ||| | || || || ||| | | || Sbjct 1248992 ATGGATTGGAACTATAAACTTAACTCCAAC-GAACGATATTTCATTTCCCACGTCCTCGC 1249050 Query 125150 CTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACGATTCTCTCAAG 125208 || ||||| | ||||| || ||||| || || ||||| |||| | | || ||| | Sbjct 1249051 ATTTTTTGCTGCTTCCGACGGCATCGTGAATGAGAATCTCCTTGAGAGGTTT-TCTAGTG 1249109 Query 125209 AGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGC 125268 | | || | |||| ||||| ||||| |||||||| ||||| || || || | Sbjct 1249110 AAATACAGATAGCTGAGGCACGTTGCTTCTACGGCTTCCAAATTATGATGGAAAATGTTC 1249169 Query 125269 ACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAA--ACA 125326 ||||||||| ||||||| ||| || || | ||||| ||||| || | | ||| Sbjct 1249170 ACTCGGAAACGTACTCTTTACTTATCGATACCTACATCAAGGATCCAGAA-GAACGCACA 1249228 Query 125327 CATGCTCTTTAACGCAATCGACACGGTGCCGTCTATA---CGTAAAAAGGCTCAATGGGT 125383 ||| || || |||| ||||| || | | | | | |||||| ||| | |||| Sbjct 1249229 CAT-CTTTTCGACGCCATCGAAACCATCTCATGTGTTAAGCGTAAA---GCTGATTGGGC 1249284 Query 125384 GATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGC 125443 | | ||||| || | |||| | | || || |||| || || |||||||| Sbjct 1249285 TCTCAGATGGATATCGGATCAACAGTCCACTTTTGCTGAACGACTCGTTGCTTTCGCCGC 1249344 Query 125444 CGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGG 125503 ||||| || ||||| || || || |||||| || ||||| ||| |||||||||| || Sbjct 1249345 TGTAGAAGGGATCTTTTTCTCTGGGTCTTTTGCTGCTATCTTCTGGATCAAGAAGCGGGG 1249404 Query 125504 ACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTG 125563 | | ||||| || || ||| | || || | || || ||||||||||| ||| Sbjct 1249405 ATTAATGCCTGGTCTTACGTTCTCCAATGAACTCATCAGCCGCGACGAGGGCCTTCACAC 1249464 Query 125564 TGACTTTGCCATTCTACTGTTTCGCAACTATCT 125596 || ||||| ||| |||| || |||||| Sbjct 1249465 GGATTTTGCATGTCTGTTGTT---CACCTATCT 1249494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741042970803520