Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3 147 2e-30 >seq3 Length=1746238 Score = 147 bits (162), Expect = 2e-30 Identities = 362/545 (66%), Gaps = 7/545 (1%) Strand=Plus/Plus Query 13165 GTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCC 13224 ||||| || ||||| | ||| || ||||| ||||| || |||| || ||||| || || Sbjct 1247229 GTGCATACCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAAGCCAGGCATCAGACC 1247288 Query 13225 TCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGC 13284 || || || | |||||| || | ||||| || || ||||| || || ||||| || || Sbjct 1247289 ACGCTTCTTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAAGATGCCTTCCACAGC 1247348 Query 13285 TGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGC 13344 |||||| || | ||| | ||| | | ||| || || ||||||||| ||| Sbjct 1247349 TGCAAATGCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGATATCCACTTGAGGGC 1247408 Query 13345 CCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAttttt 13404 ||| | || || | || | ||| || | || || || | ||| | ||| | Sbjct 1247409 CCATTCAGCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATCAAAAAGATACTCGCG 1247468 Query 13405 ttC--CTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATA 13462 ||| ||| ||| || ||||| ||||| | | ||| |||| |||||||| Sbjct 1247469 TTCAGCTTG--GTCCTTGATGTAAGTGTCTATGAGGAGAGAGTACGTTTCGGAATGAATG 1247526 Query 13463 TTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAG 13522 ||||||||| ||||| |||||||| || || | ||| || | ||||||||||| | Sbjct 1247527 TTTTCCATCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGCCTGAACTTCGTTG 1247586 Query 13523 TAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGT 13582 |||| | ||| | | ||||||||| || || || || |||||||||||| || | Sbjct 1247587 GAAAAGCGTTCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGCAAAAAAGGCCAAA 1247646 Query 13583 ATGTGCTTAATAAAttttttttCGTTTTC--TGACAACTTTA-ACCAATCTGGAAAATCT 13639 | ||| ||||| | || || || ||| || | |||||| | ||| Sbjct 1247647 ACATGCGAGATAAAGTGGCGCTCATTGTCATTGAGGCGTTCATTCCAATCGTATATGTCT 1247706 Query 13640 TTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATC 13699 || || | ||| | |||||| | ||||| || || || | ||||| || |||||| | Sbjct 1247707 TTGGAAAGATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTGCCTTTTTGTACATCTGC 1247766 Query 13700 CATAT 13704 ||||| Sbjct 1247767 CATAT 1247771 Score = 113 bits (124), Expect = 4e-20 Identities = 310/472 (66%), Gaps = 10/472 (2%) Strand=Plus/Minus Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 |||| || |||||||||||| ||| | || || || | || || || || || || Sbjct 1249485 AACAACAGACATGCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAG 1249426 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 || || ||||| ||||| | || || || || ||||| || ||||||||||| || || Sbjct 1249425 AACGTAAGACCAGGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCA 1249366 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTT 13321 || ||||| || ||||| || || || || || | | | |||| || | || | | Sbjct 1249365 GAGAAAAAGATCCCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAGTGGACTGT 1249306 Query 13322 TTACTCTCTATCCACTTTCTG---GCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378 | | | |||||| |||| ||||| | ||||| | ||||| || || || Sbjct 1249305 TGATCCGATATCCA---TCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTT 1249249 Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTG--TCTAAAATATAAGTATCTATCA 13436 || || |||| || | || | ||| | ||| || || || ||||| || | Sbjct 1249248 TCGATGGCGTCGAAAAGATGTGTGCGTTC--TTCTGGATCCTTGATGTAGGTATCGATAA 1249191 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 ||| ||| |||| || |||| |||||||||| |||||||| || || || || | Sbjct 1249190 GTAAAGAGTACGTTTCCGAGTGAACATTTTCCATCATAATTTGGAAGCCGTAGAAGCAAC 1249131 Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556 ||||| | || ||| | ||| |||| || || | || || || || || | Sbjct 1249130 GTGCCTCAGCTATCTGTATTTCACTAGAAAACCTCTCAAGGAGATTCTCATTCACGATGC 1249071 Query 13557 CGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTT 13608 |||| |||||||||||| || || | ||| ||| || | | |||||| Sbjct 1249070 CGTCGGAAGCAGCAAAAAATGCGAGGACGTGGGAAATGAAATATCGTTCGTT 1249019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430973197448304