Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 176 1e-38 seq3 152 1e-31 seq1 149 1e-30 >seq2 Length=1435055 Score = 176 bits (194), Expect = 1e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| |||| ||| || || || | ||||||||| ||||||||||| ||||| Sbjct 394820 ATACCTCCTCTGAGCCGAAGGACAAGGTGAAGTGTAGATTCCTTCTGAATATTGTAGTCG 394879 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || || |||||||| ||||| || || || | ||||| |||||| Sbjct 394880 GAGAGAGTGCGGCCATCCTCGAGTTGTTTGCCAGCGAAGATAAGACGTTGTTGGTCAGGA 394939 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||||||||| || || ||||| || | |||||| | || Sbjct 394940 GGGATGCCCTCCTTATCCTGAATCTTCGCCTTGACATTGTCAATGGTATCTGATGACTCG 394999 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| |||||||| || || || || |||||||| Sbjct 395000 ACCTCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 395049 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || |||||||| || || || || || | |||| || || || || Sbjct 394616 AGATGCAGAGTCGACTCTTTCTGTATGTTGTAATCTGACAATGTTCGGCCATCCTCAAGC 394675 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || ||||| || || | |||||||||||||| || || || |||||||||||| Sbjct 394676 TGCTTGCCTGCAAAGATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCCTGAATC 394735 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||||| || ||||| || | ||| || | ||| || || || || || ||||| || Sbjct 394736 TTTGCCTTGACATTATCGATGGTGTCAGAGGATTCGACTTCGAGGGTGATCGTCTTGCCC 394795 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | || || || || |||||||| Sbjct 394796 GTCAAAGTCTTGACGAAAATCTGCAT 394821 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || |||||||| | ||||| ||||||||||| || |||||| Sbjct 395321 ATTCCGCCACGCAGGCGGAGAACTAGATGGAGAGTAGACTCTTTCTGAATGTTGTAGTCA 395380 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || || |||| || || ||||| ||||| || | ||||||||||| Sbjct 395381 GAAAGCGTTCTCCCATCCTCTAACTGCTTCCCAGCGAAAATAAGGCGTTGTTGATCAGGG 395440 Query 104450 GGTATTC 104456 || |||| Sbjct 395441 GGAATTC 395447 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| ||||| ||||||||||| || || |||||||| || Sbjct 395065 AAGGACAAGATGCAGGGTCGATTCCTTCTGGATATTATAGTCGGAGAGTGTTCTACCATC 395124 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTAT 104454 || || ||||| || ||||| || || | |||||| || ||||| || Sbjct 395125 CTCAAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCGGGAGGGAT 395172 >seq3 Length=1746238 Score = 152 bits (168), Expect = 1e-31 Identities = 382/575 (66%), Gaps = 18/575 (3%) Strand=Plus/Plus Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 ||||||| | || |||||||| || || |||||||| | |||||| ||||||| Sbjct 1248920 ATATGGAATTTTTATAAACAGGCACAGGCATCATTTTGGACAGCCGAAGAAATAGATCTC 1248979 Query 268793 TCTTATGACTTAATAGATTGGAA----AAATTTAAAACCAGAAGAAAGAAGATTTATATC 268848 | | |||| | || |||||||| ||| |||| ||| | ||| || || || || Sbjct 1248980 TGTCATGATCTCATGGATTGGAACTATAAACTTAACTCCA-ACGAACGATATTTCATTTC 1249038 Query 268849 TTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAA 268908 | | || || |||||||| | | || || ||||| || || ||||| | |||| Sbjct 1249039 CCACGTCCTCGCATTTTTTGCTGCTTCCGACGGCATCGTGAATGAGAATCTCCTTGAGAG 1249098 Query 268909 GTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTAT 268968 ||| | | || ||||||| |||| || | || || ||||| ||||| || || Sbjct 1249099 GTTTTCTAGTGAAATACAGATAGCTGAGGCACGTTGCTTCTACGGCTTCCAAATTATGAT 1249158 Query 268969 AGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAA 269028 |||||| |||| || || | |||| | || | || ||||| || || | ||| Sbjct 1249159 GGAAAATGTTCACTCGGAAACGTACTCTTTACTTATCGATACCTACATCAAGGAT----- 1249213 Query 269029 CGAAAAGAAAAGAC---TATTTTCTTCT--ATGAGAACTATGGACTGTGTGAGaaaaaaa 269083 | | ||||| || | ||||| | || ||| || ||||| | ||| Sbjct 1249214 CCAGAAGAACGCACACATCTTTTCGACGCCATCGAAACCATCTCATGTGTTAAGCGTAAA 1249273 Query 269084 TCTGAATGGGCTCTGAAATGGATAAACGAT--AGCGCGC-CTTACGGAGAAAGGTTAGTT 269140 |||| |||||||| | ||||||| ||| | | | ||| | ||| | | ||| Sbjct 1249274 GCTGATTGGGCTCTCAGATGGATATCGGATCAACAGTCCACTTTTGCTGAACGACTCGTT 1249333 Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 ||||| |||||||||||||| || || || || ||||||||||| |||||||| ||| | Sbjct 1249334 GCTTTCGCCGCTGTAGAAGGGATCTTTTTCTCTGGGTCTTTTGCTGCTATCTTCTGGATC 1249393 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260 ||||| | || | ||||| || | || ||||| || ||| | || ||| | ||||| Sbjct 1249394 AAGAAGCGGGGATTAATGCCTGGTCTTACGTTCTCCAATGAACTCATCAGCCGCGACGAG 1249453 Query 269261 GGTTTACACTGCGACTTCGCTTGTTTATTATTTAC 269295 || | ||| || || || ||| | || || || Sbjct 1249454 GGCCTTCACACGGATTTTGCATGTCTGTTGTTCAC 1249488 Score = 131 bits (144), Expect = 4e-25 Identities = 373/565 (66%), Gaps = 20/565 (4%) Strand=Plus/Minus Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 |||||| |||||||||| |||| | || || || ||||| | || || | ||||| Sbjct 1247771 ATATGGCAGATGTACAAAAAGGCAGAAGCATCCTTCTGGACGGCCGAGGAGATGGATCTT 1247712 Query 268793 TCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGA-------TTTAT 268845 || | ||| || |||||||| | || || || | | || ||||| Sbjct 1247711 TCCAAAGACATATACGATTGGAA----TGAACGCCTCAATGACAATGAGCGCCACTTTAT 1247656 Query 268846 ATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGA 268905 || || || | || |||||||| | | ||||| ||||| |||||||| || || || Sbjct 1247655 CTCGCATGTTTTGGCCTTTTTTGCTGCTTCCGATGGCATCGTCAACGAAAACCTTGTCGA 1247596 Query 268906 GAAGTTCTGTCAA-GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAG 268964 | | | | ||| || || ||| ||||||| | || || || || || || || Sbjct 1247595 -ACGCTTTTCCAACGAAGTTCAGGCCGCTGAAGCTCGCTGCTTCTATGGTTTTCAAATCA 1247537 Query 268965 CTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATA 269024 || ||||| |||||||| || | |||| ||| | ||||| ||||| || | || Sbjct 1247536 TGATGGAAAACATTCATTCCGAAACGTACTCTCTCCTCATAGACACTTACATCAAGGACC 1247477 Query 269025 ACAACGAAAAGAAAAGA-CTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaa 269082 | | | || | | | || ||| | | || |||| | || |||| | | || Sbjct 1247476 A-AGCTGAACGCGAGTATCTTTTTGATGCCATCGAGACC-ATCCCCTGTATCAAGCGTAA 1247419 Query 269083 aTCTGAATGGGCTCTGAAATGGATAA---ACGATAGCGCGCCTTACGGAGAAAGGTTAGT 269139 |||||||||| || || |||||| || | | | | | | || ||| | || || Sbjct 1247418 GGCTGAATGGGCCCTCAAGTGGATATCTGACAAGAACTCTACATTCGCCGAACGATTGGT 1247359 Query 269140 TGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTT 269199 || ||||| ||||| ||||| || |||||||| || || ||||| | ||||||||| | Sbjct 1247358 CGCATTTGCAGCTGTGGAAGGCATCTTCTTTTCAGGCTCCTTTGCATCAATCTTTTGGCT 1247299 Query 269200 GAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGA 269259 ||||| | || || ||||| || ||||| ||||| || || | || || | || || Sbjct 1247298 CAAGAAGCGTGGTCTGATGCCTGGCTTAACCTTCTCAAATGAGCTTATCAGTCGTGATGA 1247239 Query 269260 AGGTTTACACTGCGACTTCGCTTGT 269284 ||| | ||| ||||||||||||| Sbjct 1247238 GGGTATGCACACCGACTTCGCTTGT 1247214 >seq1 Length=1986796 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || ||||| ||||||||||| ||||| || || || | ||||||||| ||| Sbjct 634822 AGATGAAGGGTGGATTCCTTCTGAATATTGTAGTCTGAAAGTGTGCGACCGTCTTCAAGT 634881 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || ||||| || | | |||||| || || || || ||||| || || || ||| Sbjct 634882 TGCTTGCCGGCAAAGATCAAACGCTGTTGGTCGGGGGGGATCCCTTCCTTGTCTTGGATC 634941 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || ||||| ||||| || | |||||| || || ||||| || ||||| ||||| ||| Sbjct 634942 TTGGCTTTGACATTGTCAATGGTATCAGAAGACTCCACCTCCAGGGTAATGGTCTTGCCA 635001 Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560 || | || |||||||| || |||||| Sbjct 635002 GTCAAAGTCTTTACAAAGATTTGCATT 635028 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || |||||||||||||| ||||| || || || | ||| ||||| || Sbjct 634529 AGATGGAGGGTGGACTCTTTCTGAATATTGTAGTCTGAGAGGGTGCGACCATCTTCGAGC 634588 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || || || || | | ||||||||| ||||| || ||||| || ||||| || Sbjct 634589 TGCTTCCCGGCGAAGATCAAGCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCCTGGATT 634648 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || || || || | ||||||| | || ||||| || ||||| ||||| || Sbjct 634649 TTGGCCTTGACGTTATCAATGGTATCGGACGACTCGACCTCGAGAGTAATGGTCTTTCCG 634708 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | || || ||||| || ||||| Sbjct 634709 GTCAAAGTCTTGACAAAGATTTGCAT 634734 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || |||||||| || || || |||||||| || || || || ||||| Sbjct 634037 TCCTTCTGGATGTTGTAGTCAGAAAGCGTCCTCCCGTCTTCAAGCTGCTTGCCCGCAAAG 634096 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || ||||| || || ||||| || |||||||||||||| || || || Sbjct 634097 ATCAGGCGCTGCTGGTCAGGCGGAATCCCTTCCTTGTCCTGAATCTTTGCCTTCACGTTG 634156 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || | || || || | ||||| ||||| || || || || || || Sbjct 634157 TCAATCGTGTCCGATGACTCCACTTCCAACGTAATCGTCTTGCCGGTCAGCGTCTTCACG 634216 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 634217 AAAATCTGCAT 634227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151372553984416