Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 2e-14 seq899 89.7 3e-13 seq169 89.7 3e-13 seq7 89.7 3e-13 seq305 87.8 9e-13 seq49 87.8 9e-13 seq45 87.8 9e-13 >seq5 Length=1496287 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| |||| | ||||| | | |||||||||| |||||||||||||||||||||| Sbjct 142464 AAAAATTCAATTATGGCCAACGTGGGGATCGAACCCAAGACCTTCGCGTTATTAGCACGA 142523 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||| | |||| Sbjct 142524 CGCTCTAACCAACTGAGCTAGTCGGCC 142550 Score = 91.5 bits (100), Expect = 8e-14 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||| | | |||||||||| |||||||||||||||||||||||||||| |||| Sbjct 295066 ATTGGCCAACGTGGGGATCGAACCCAAGACCTTCGCGTTATTAGCACGACGCTCTAACCA 295007 Query 11514 ACTGAGCTAATGGGCCG 11530 ||||||||| | ||||| Sbjct 295006 ACTGAGCTAGTCGGCCG 294990 Score = 89.7 bits (98), Expect = 3e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||| | | |||||||||| |||||||||||||||||||||||||||| |||| Sbjct 145443 ATTGGCCAACGTGGGGATCGAACCCAAGACCTTCGCGTTATTAGCACGACGCTCTAACCA 145502 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||| | |||| Sbjct 145503 ACTGAGCTAGTCGGCC 145518 Score = 89.7 bits (98), Expect = 3e-13 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 |||||| ||||| | | |||||||||| ||||||||||||||||||||||||||| Sbjct 238848 AATCAA--TGGCCAACGTGGGGATCGAACCCAAGACCTTCGCGTTATTAGCACGACGCTC 238791 Query 11508 TRACCAACTGAGCTAATGGGCC 11529 | ||||||||||||| | |||| Sbjct 238790 TAACCAACTGAGCTAGTCGGCC 238769 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||||||||||||||||||||||| |||| |||||||| | || Sbjct 191404 GGATCGAACCCAAGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAGTCGG 191463 Query 11528 CC 11529 || Sbjct 191464 CC 191465 >seq899 Length=2839 Score = 89.7 bits (98), Expect = 3e-13 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||||||||||||||||||||||| ||||||||||||| | || Sbjct 2134 GGATCGAACCCAAGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAGTCGG 2193 Query 11528 CCG 11530 ||| Sbjct 2194 CCG 2196 >seq169 Length=127382 Score = 89.7 bits (98), Expect = 3e-13 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| |||| || | ||||| | | |||||||||| |||||||||||||||||| Sbjct 2722 TTAAAAAAACATTTGAATGGCCAACGTGGGGATCGAACCCAAGACCTTCGCGTTATTAGC 2781 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||| | |||| Sbjct 2782 ACGACGCTCTAACCAACTGAGCTAGTCGGCC 2812 >seq7 Length=1106505 Score = 89.7 bits (98), Expect = 3e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||| | | |||||||||| |||||||||||||||||||||||||||| |||| Sbjct 741363 ATTGGCCAACGTGGGGATCGAACCCAAGACCTTCGCGTTATTAGCACGACGCTCTAACCA 741304 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||| | |||| Sbjct 741303 ACTGAGCTAGTCGGCC 741288 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||||||||||||||||||||||| ||||||||||||| | || Sbjct 748565 GGATCGAACCCAAGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAGTCGG 748624 Query 11528 CC 11529 || Sbjct 748625 CC 748626 >seq305 Length=20299 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||||||||||||||||||||||| ||||||||||||| | || Sbjct 8822 GGATCGAACCCAAGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAGTCGG 8763 Query 11528 CC 11529 || Sbjct 8762 CC 8761 >seq49 Length=396071 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||||||||||||||||||||||| ||||||||||||| | || Sbjct 316679 GGATCGAACCCAAGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAGTCGG 316738 Query 11528 CC 11529 || Sbjct 316739 CC 316740 >seq45 Length=450441 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||||||||||||||||||||||| ||||||||||||| | || Sbjct 239030 GGATCGAACCCAAGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAGTCGG 238971 Query 11528 CC 11529 || Sbjct 238970 CC 238969 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261485616509152