Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 seq1 87.8 2e-12 >seq2 Length=1435055 Score = 105 bits (116), Expect = 6e-18 Identities = 153/213 (72%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 94798 CACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATC 94854 ||||||| |||| ||| || || || || | ||| ||||| | | | |||| | ||| Sbjct 394611 CACCAAGATGCAGAGTCGACTCTTTCTGTATGTTGTAATC--TGACAATGTTCGGCCATC 394668 Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 ||| ||||| || || ||||||| | | ||| ||||| ||||||||||| || || || Sbjct 394669 CTCAAGCTGCTTGCCTGCAAAGATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATC 394728 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGT 94974 | ||| ||||||||||| ||| ||||||| | ||||| || | ||||| || Sbjct 394729 CTGAATCTTTGCCTTGACATTATCGATGGTGTCAGAGGATTCGACTTCGAGGGTGATCGT 394788 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||| || || || |||||||| Sbjct 394789 CTTGCCCGTCAAAGTCTTGACGAAAATCTGCAT 394821 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || | || | ||| | ||||||||||| || | || || ||| Sbjct 394823 CCTCCTCTGAGCCGAAGGACAAGGTGAAGTGTAGATTCCTTCTGAATATTGTAGTCGGAG 394882 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | |||||| || ||||| || | ||||| | | ||| || || ||||| Sbjct 394883 AGAGTGCGGCCATCCTCGAGTTGTTTGCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGG 394942 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | ||| || |||||||| | | | || || | ||||| Sbjct 394943 ATGCCCTCCTTATCCTGAATCTTCGCCTTGACATTGTCAATGGTATCTGATGACTCGACC 395002 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||| || || ||||||||||| || || || |||||||||| Sbjct 395003 TCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCATGC 395051 >seq1 Length=1986796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864 |||| || || || || || | ||| ||||| || |||| || || |||||| Sbjct 634253 TGCAGCGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTGCGACCGTCTTCAAGCTGT 634312 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 |||||| ||||||| || | ||| || || |||||||| || || ||||| | ||||| Sbjct 634313 TTTCCGGCAAAGATCAAGCGTTGTTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATTTTC 634372 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 |||||||| | | ||||| | || || || | ||||||||| || || || Sbjct 634373 GCCTTGACATTATCAATCGTGTCGGAAGATTCAACCTCGAGCGTGATGGTCTTGCCCGTC 634432 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || ||||| Sbjct 634433 AGCGTCTTGACAAAAATTTGCAT 634455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448281382422720