Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3 132 5e-26 >seq3 Length=1746238 Score = 132 bits (146), Expect = 5e-26 Identities = 346/533 (65%), Gaps = 3/533 (1%) Strand=Plus/Plus Query 21491 TGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCT 21550 |||| ||| ||||| | ||| || | ||||| || || ||||| || ||||| | || Sbjct 1247230 TGCATACCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAAGCCAGGCATCAGACCA 1247289 Query 21551 CTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCA 21610 | ||| || | |||||| ||||| ||||| | ||||||||||| ||||| || || || Sbjct 1247290 CGCTTCTTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAAGATGCCTTCCACAGCT 1247349 Query 21611 GCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCC 21670 |||||||| || |||||||| || ||||||| | || || ||||||| || ||| Sbjct 1247350 GCAAATGCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGATATCCACTTGAGGGCC 1247409 Query 21671 CATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAtttttt 21730 |||| ||||| || ||||| || || || || || | ||||||| | | Sbjct 1247410 CATTCAGCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATCAAAAAGATACTCGCGT 1247469 Query 21731 tCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTT 21790 ||| || || | ||| | ||| |||| ||||| || ||| Sbjct 1247470 TCAGCTTGGTCCTTGATGTAAGTGTCTATGAGGAGAGAGTACGTTTCGGAATGAATGTTT 1247529 Query 21791 TCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAA 21850 || ||| || ||||| || || || || | || || | ||||| ||| || Sbjct 1247530 TCCATCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGCCTGAACTTCGTTGGAA 1247589 Query 21851 AATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATA 21910 || |||| | | |||||| || || || ||||| || |||||||| ||||| | | Sbjct 1247590 AAGCGTTCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGCAAAAAAGGCCAAAACA 1247649 Query 21911 TTTTTTATAAAATATCGTTCGTTATCTGTTA---ATTTTTTCCAATCTAATAAATCTTTT 21967 | ||||| | || || || || | | || |||||||| ||| ||||| Sbjct 1247650 TGCGAGATAAAGTGGCGCTCATTGTCATTGAGGCGTTCATTCCAATCGTATATGTCTTTG 1247709 Query 21968 GATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACAT 22020 || | ||| | || || | ||||| ||| || |||||||| ||||| Sbjct 1247710 GAAAGATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTGCCTTTTTGTACAT 1247762 Score = 96.9 bits (106), Expect = 4e-15 Identities = 359/567 (63%), Gaps = 5/567 (1%) Strand=Plus/Minus Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 |||| || |||||||||||| || | || || || | || || | |||||| || Sbjct 1249485 AACAACAGACATGCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAG 1249426 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 || || | ||| ||||||||||| | ||| || | ||| || || | ||||| | || Sbjct 1249425 AACGTAAGACCAGGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCA 1249366 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646 || || || || || || || || || || ||||| | ||||||| | | || || | | Sbjct 1249365 GAGAAAAAGATCCCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAGTGGACTGT 1249306 Query 21647 TTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCA 21706 | |||| |||||||| | ||||| | || || |||| ||| || || || Sbjct 1249305 TGATCCGATATCCATCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTTTCG 1249246 Query 21707 ATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNA 21766 || || | |||||||| | ||| ||| ||| | ||| | Sbjct 1249245 ATGGCGTCGAAAAGATGTGTGCGTTCTTCTGGATCCTTGATGTAGGTATCGATAAGTAAA 1249186 Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||| |||| || || | |||||| ||| || || || ||||| || || | |||| Sbjct 1249185 GAGTACGTTTCCGAGTGAACATTTTCCATCATAATTTGGAAGCCGTAGAAGCAACGTGCC 1249126 Query 21827 TCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCA 21886 || | || | || | |||| | | | | || ||||| || || || || Sbjct 1249125 TCAGCTATCTGTATTTCACTAGAAAACCTCTCAAGGAGATTCTCATTCACGATGCCGTCG 1249066 Query 21887 CTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTT 21946 || ||||||||||| | | | || |||||||||||||| ||||| ||| Sbjct 1249065 GAAGCAGCAAAAAATGCGAGGACGTGGGAAATGAAATATCGTTCGTT-GGAGTTAAGTTT 1249007 Query 21947 ----TTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGC 22002 |||||||| | | ||| | | | ||||| |||||| | ||||||||| || Sbjct 1249006 ATAGTTCCAATCCATGAGATCATGACAGAGATCTATTTCTTCGGCTGTCCAAAATGATGC 1248947 Query 22003 AATAGCCTTTTTATACATAATCCAGAT 22029 |||| |||||| | | |||| || Sbjct 1248946 CTGTGCCTGTTTATAAAAATTCCATAT 1248920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531889151372480