Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq47 113 3e-20 seq42 107 1e-18 seq331 105 4e-18 seq127 105 4e-18 seq1 93.3 3e-14 seq5 91.5 1e-13 seq2 84.2 1e-11 >seq47 Length=644074 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||| |||||||||||||||||| || ||||| || Sbjct 630547 AAGCCCATTCCCTTGGCTGTGGTTTTGCTAGATAGTAGATAGGGACAGTGGGAATCTTGT 630488 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||| || Sbjct 630487 TAATCCATTCATGCATGTCACTAATTAGATGATGA 630453 >seq42 Length=381085 Score = 107 bits (118), Expect = 1e-18 Identities = 181/261 (69%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| | ||||| || ||||| || || || ||||| ||| ||| ||| |||| ||||| Sbjct 58567 AAGATTGAGGGCAAAGGAAATGGCATCAAGACCGTTATTCCCAATATGGCTGATGTCGCC 58508 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 | ||| ||| | || ||| | || || | || || | |||||| |||||||| || || Sbjct 58507 AGGGCCCTCAGTCGTCCTCCGACATATACTACCAAGTTTTTCGGTTGCGAACTCGGGGCC 58448 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 |||||| || || | ||||| || |||| || || ||||| | || || ||| Sbjct 58447 CAGACGTCCTTCGACGAGAAAAATGATCGCTATATTGTCAACGGTGCCCACAA---TGCA 58391 Query 6414 AAGC---TGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGC 6470 ||| | | || |||| ||||| || || ||| || || || || ||| ||| Sbjct 58390 GAGCGCCTTCGCGAACTACTCGACGGTTTCATCGACAAATTCGTTCTTTGCAGGGCCTGC 58331 Query 6471 GATAACCCGGAGACCGAGCTT 6491 | ||||||||||| |||||| Sbjct 58330 AAGAACCCGGAGACTGAGCTT 58310 >seq331 Length=83472 Score = 105 bits (116), Expect = 4e-18 Identities = 77/88 (88%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGGGTAATCTCGTTAATC 25961 |||||| |||||||||||||||||| ||||||||||||| || ||| |||||| |||||| Sbjct 58643 AAGCCCATTCCCTTGGCTGTGGTTTTGCTAGATAGTAGACAGTGGG-AATCTCATTAATC 58585 Query 25962 CTTTCATGCGCGTCACTAATTAGATGAC 25989 | ||||| || ||||||||| |||||| Sbjct 58584 CATTCATATGCATCACTAATTGGATGAC 58557 >seq127 Length=169058 Score = 105 bits (116), Expect = 4e-18 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG--GGT---AATCTCGT 25956 ||||| ||||||||||||||| ||| |||||||||||||||||| ||| ||||| || Sbjct 33197 AAGCCTGTTCCCTTGGCTGTGATTTTGCTAGATAGTAGATAGGGATGGTAGAAATCTTGT 33256 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 ||||| ||||||| ||||||||||||||||| Sbjct 33257 TAATCTATTCATGCATGTCACTAATTAGATGAC 33289 >seq1 Length=1986796 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | || ||||| || | ||| || || ||| || || || |||||||||| Sbjct 634227 TACCCCCGCGCAGACGCAGAACGAGATGCAGCGTCGACTCTTTCTGGATGTTGTAATCAG 634286 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | || |||| || | |||||||||||||| || | ||||||||| || | | Sbjct 634287 ACAGAGTGCGACCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCAGGAG 634346 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || |||||| ||||| ||| ||||| | | || || | ||||| Sbjct 634347 GAATGCCCTCCTTGTCCTGGATTTTCGCCTTGACATTATCAATCGTGTCGGAAGATTCAA 634406 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || ||||||| || || || || || ||||| Sbjct 634407 CCTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAAATTTGCAT 634455 >seq5 Length=1496287 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| | |||||||||||||| |||||||||||||||||||||| ||||||||||| | Sbjct 1405226 CTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCACTATCGGTCTCTTGC 1405285 Query 20009 TAATATTTAGCCTTA 20023 | |||||||| ||| Sbjct 1405286 CATTATTTAGCTTTA 1405300 Score = 87.8 bits (96), Expect = 1e-12 Identities = 74/91 (81%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||| ||| |||||||||||||| || ||||| || Sbjct 1403009 AAGCCCATTCCCTTGGCTGTGGTTTTGCTGGATAGTAGATAGGGACAGTGGGAATCTTGT 1403068 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATG 25987 ||||| ||||||| || | ||||||||| Sbjct 1403069 TAATCTATTCATGCATGTTGCCAATTAGATG 1403099 >seq2 Length=1435055 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 38108 CACCAA-ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGT 38166 |||||| ||| ||||| ||| || || || |||||||| ||||| || | || | Sbjct 394611 CACCAAGATGCAGAGTCGACTCTTTCTGTATGTTGTAATCTGACAATGTTCGGCCATCCT 394670 Query 38167 CTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCA 38226 | | || || || ||||| || || ||||||||||| | || | || || || ||| Sbjct 394671 CAAGCTGCTTGCCTGCAAAGATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCCT 394730 Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTT 38286 ||| ||| ||| ||||| | || || || ||| ||||| | || || || | Sbjct 394731 GAATCTTTGCCTTGACATTATCGATGGTGTCAGAGGATTCGACTTCGAGGGTGATCGTCT 394790 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||||||| || || ||||| |||||||| Sbjct 394791 TGCCCGTCAAAGTCTTGACGAAAATCTGCAT 394821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940048039912