Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 221 2e-52 >seq3 Length=1746238 Score = 221 bits (244), Expect = 2e-52 Identities = 395/569 (69%), Gaps = 12/569 (2%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || |||||| ||||| ||| || |||||||| | || || | ||| ||||| Sbjct 1249485 AACAACAGACATGCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAG 1249426 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 ||||| || || ||||||| || ||||| || | ||| || || | ||||| || ||| Sbjct 1249425 AACGTAAGACCAGGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCA 1249366 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GC 32829 || || || || |||||||| || || || |||| |||| || || || || | Sbjct 1249365 GAGAAAAAGATCCCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAGTGGACTGT 1249306 Query 32830 TG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 || || |||||| | |||||||||| || || || ||||| | || || || Sbjct 1249305 TGATCCGATATCCATCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTTTCG 1249246 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAA 32946 || || | || |||| | ||| | ||| || | || ||||| || | ||| Sbjct 1249245 ATGGCGTCGAAAAGATGTGTGCGTTCTTCTGGATCCTTGATGTAGGTATCGATAAGTAAA 1249186 Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006 || || | ||||||| |||| ||||| || ||||| || ||||||||||| | | Sbjct 1249185 GAGTA--CGTTTCCGAGTGAACATTTTCCATCATAATTTGGAAGCCGTAGAAGCAACGTG 1249128 Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066 |||| | ||||||| ||| || |||| | || | ||| |||||||| || |||| Sbjct 1249127 CCTCAGCTATCTGTATTTCACTAGAAAACCTCTCAAGGAGATTCTCATTCACGATGCCGT 1249068 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA-GT 33125 | || |||||||| || | || || || |||||| ||||| ||| |||| || Sbjct 1249067 CGGAAGCAGCAAAAAATGCGAGGACGTGGGAAATGAAATATCGTTCGT-TGGAGTTAAGT 1249009 Query 33126 TTAT---TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 33182 |||| ||||||| ||| ||| | | | | ||| | |||||| |||||||||||||| Sbjct 1249008 TTATAGTTCCAATCCATGAGATCATGACAGAGATCTATTTCTTCGGCTGTCCAAAATGAT 1248949 Query 33183 GCCTCTGCCTTTTTATACATATTCCAGAT 33211 |||| ||||| |||||| | |||||| || Sbjct 1248948 GCCTGTGCCTGTTTATAAAAATTCCATAT 1248920 Score = 187 bits (206), Expect = 3e-42 Identities = 379/559 (68%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| ||||| ||| ||| | |||||| || | ||| || | || || || || || | Sbjct 1247214 ACAAGCGAAGTCGGTGTGCATACCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAA 1247273 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 || ||||| || |||||||| || |||||||| || || ||||| || || |||||||| Sbjct 1247274 GCCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAA 1247333 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 32836 || ||||| || || ||||| || | | || || | | | | | |||| Sbjct 1247334 GATGCCTTCCACAGCTGCAAATGCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGA 1247393 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||||||| | ||||| || ||||| || | ||| || || ||||| || |||| Sbjct 1247394 TATCCACTTGAGGGCCCATTCAGCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATC 1247453 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 ||| ||||| | |||| || || | || || || || | ||| ||| | Sbjct 1247454 AAAAAGATACTCGCGTTCAGCTTGGTCCTTGATGTAAGTGTCTATGAGGAGAGAGTACGT 1247513 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016 ||| |||||||||||||| || |||||||| || |||||||| | ||| || | Sbjct 1247514 TTCGGAATGAATGTTTTCCATCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGC 1247573 Query 33017 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 33076 ||| ||||| | |||| ||||| | | ||||| || || || || || || || Sbjct 1247574 CTGAACTTCGTTGGAAAAGCGTTCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGC 1247633 Query 33077 AAAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTC-TGGTGTTAGTTTATTCC 33132 |||||| ||||| ||||| ||||| | | | ||| | | | ||| ||||| Sbjct 1247634 AAAAAAGGCCAAAACATGCGAGATAAAGTGGCGCTCATTGTCATTGAG-GCGTTCATTCC 1247692 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 |||| | || ||||| || | ||||| || || | ||||| || ||||| ||||||| Sbjct 1247693 AATCGTATATGTCTTTGGAAAGATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTGCCT 1247752 Query 33193 TTTTATACATATTCCAGAT 33211 |||| ||||| | ||| || Sbjct 1247753 TTTTGTACATCTGCCATAT 1247771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633618123459200