Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 141 8e-29 seq2 109 5e-19 >seq1 Length=1986796 Score = 141 bits (156), Expect = 8e-29 Identities = 158/208 (76%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||||||||| || || |||| || | || |||||||| || Sbjct 635028 AATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTC 634969 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| || || || || || |||| || | || ||||| |||||||| || || || Sbjct 634968 TGATACCATTGA--CAATGTCAAAGCCAAGATCCAA-GACAAGGAAGGGATCCCCCCCGA 634912 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | || ||||||||||| ||| | ||||| | |||||| | || || Sbjct 634911 CCAACAGCGTTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACACTTTCAGACTA 634852 Query 25175 CAATATTCAAAAAGAATCCACGCTACAT 25202 ||||||||| || |||||||| || ||| Sbjct 634851 CAATATTCAGAAGGAATCCACCCTTCAT 634824 Score = 129 bits (142), Expect = 5e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||||||||||| || |||| || |||| || |||||||| Sbjct 634734 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACTCTCGAGGTCGAGTCGTCC 634675 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | || | ||| |||||| ||||| ||||| || || || || || Sbjct 634674 GATACCATTGA-TAACGTCAAGGCCAAAATCCAGGACAAGGAAGGCATCCCTCCCGATCA 634616 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || ||||| || || | ||||||| |||||| | || ||||| Sbjct 634615 ACAGCGCTTGATCTTCGCCGGGAAGCAGCTCGAAGATGGTCGCACCCTCTCAGACTACAA 634556 Query 25178 TATTCAAAAAGAATCCACGCTACAT 25202 |||||| ||||| ||||| || ||| Sbjct 634555 TATTCAGAAAGAGTCCACCCTCCAT 634531 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| |||| || || ||||||| |||| || || || || Sbjct 634455 ATGCAAATTTTTGTCAAGACGCTGACGGGCAAGACCATCACGCTCGAGGTTGAATCTTCC 634396 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| ||||| || || ||||| ||||||||| Sbjct 634395 GACACGATTGATAATGTCAAGGCGAAAATCCAGGACAAGGAGGGCATTCCTCCTGACCAA 634336 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||| ||||| | ||||| | ||||||| || |||||||| Sbjct 634335 CAACGCTTGATCTTTGCCGGAAAACAGCTTGAAGACGGTCGCACTCTGTCTGATTACAAC 634276 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || ||||| ||| | || || Sbjct 634275 ATCCAGAAAGAGTCGACGCTGCATCTCGTTCT 634244 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || | || || | ||||||||||| || Sbjct 634227 ATGCAGATTTTCGTGAAGACGCTGACCGGCAAGACGATTACGTTGGAAGTGGAGTCATCG 634168 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| |||| | ||| ||||| ||||||||||| |||||||| Sbjct 634167 GACACGATTGACAACGTGAAGGCAAAGATTCAG-GACAAGGAAGGGATTCCGCCTGACCA 634109 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGA 25153 ||||| | || ||||| ||||| || | ||||| Sbjct 634108 GCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAAGA 634073 >seq2 Length=1435055 Score = 109 bits (120), Expect = 5e-19 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || || || | ||||| |||| || ||||| || Sbjct 395049 ATGCAGATTTTCGTCAAGACTCTTACTGGCAAGACTATCACTCTCGAGGTCGAGTCATCA 394990 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | || || | ||| || || || || || || |||||| Sbjct 394989 GATACCATTGA--CAATGTCAAGGCGAAGATTCAG-GATAAGGAGGGCATCCCTCCTGAC 394933 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || |||| || || ||||||||| | || |||| |||||| | ||| ||| Sbjct 394932 CAACAACGTCTTATCTTCGCTGGCAAACAACTCGAGGATGGCCGCACTCTCTCCGACTAC 394873 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| || ||||| || || || | || || |||| |||||||| Sbjct 394872 AATATTCAGAAGGAATCTACACTTCACCTTGTCCTTCGGCTCAGAGGAGG 394823 Score = 104 bits (114), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | ||||| ||||||| || || ||| Sbjct 394821 ATGCAGATTTTCGTCAAGACTTTGACGGGCAAGACGATCACCCTCGAAGTCGAATCCTCT 394762 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| | ||||| | ||| || || || || ||||| ||||| Sbjct 394761 GACACCATCGATAATGTCA---AGGCAAAGATTCA-GGATAAGGAGGGTATTCCTCCTGA 394706 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || ||||| ||||| || | || |||| || || || ||||| Sbjct 394705 TCAACAACGTCTGATCTTTGCAGGCAAGCAGCTTGAGGATGGCCGAACATTGTCAGATTA 394646 Query 25175 CAATATTCAAAAAGAATCCACGCTACAT 25202 ||| || || ||||| || || || ||| Sbjct 394645 CAACATACAGAAAGAGTCGACTCTGCAT 394618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433318747363880