Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 149 5e-31 seq1 127 2e-24 >seq2 Length=1435055 Score = 149 bits (164), Expect = 5e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||||| || || || ||| |||| || ||||| ||| || | Sbjct 394821 ATGCAGATTTTCGTCAAGACTTTGACGGGCAAGACGATCACCCTCGAAGTCGAATCCTCT 394762 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| ||||| || |||||||||||||| || |||||| Sbjct 394761 GACACCATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAA 394702 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| ||||| ||| | |||||| ||| || | || ||||||||| Sbjct 394701 CAACGTCTGATCTTTGCAGGCAAGCAGCTTGAGGATGGCCGAACATTGTCAGATTACAAC 394642 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| || || Sbjct 394641 ATACAGAAAGAGTCGAC 394625 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || ||||||| || || || | | Sbjct 395049 ATGCAGATTTTCGTCAAGACTCTTACTGGCAAGACTATCACTCTCGAGGTCGAGTCATCA 394990 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || ||||| || |||||||| || || || || ||| Sbjct 394989 GATACCATTGACAATGTCAAGGCGAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCAA 394930 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || || |||||||| | |||||| |||||| ||||||| ||||| Sbjct 394929 CAACGTCTTATCTTCGCTGGCAAACAACTCGAGGATGGCCGCACTCTCTCCGACTACAAT 394870 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || ||||| || Sbjct 394869 ATTCAGAAGGAATCTAC 394853 >seq1 Length=1986796 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | || || || || |||| || || || ||| | || Sbjct 634455 ATGCAAATTTTTGTCAAGACGCTGACGGGCAAGACCATCACGCTCGAGGTTGAATCTTCC 634396 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| ||||| || ||||||||||| ||||| || || ||| Sbjct 634395 GACACGATTGATAATGTCAAGGCGAAAATCCAGGACAAGGAGGGCATTCCTCCTGACCAA 634336 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || |||||||| |||||| | || || ||||| | || ||||||||| Sbjct 634335 CAACGCTTGATCTTTGCCGGAAAACAGCTTGAAGACGGTCGCACTCTGTCTGATTACAAC 634276 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || || | ||| | ||| |||| ||||||| ||| Sbjct 634275 ATCCAGAAAGAGTCGACGCTGCATCTCGTTCTGCGTCTGCGCGGGGGT 634228 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| ||||| || || | ||||| || || || | || Sbjct 634734 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACTCTCGAGGTCGAGTCGTCC 634675 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| ||||| || |||||||| || || || ||||||||| Sbjct 634674 GATACCATTGATAACGTCAAGGCCAAAATCCAGGACAAGGAAGGCATCCCTCCCGATCAA 634615 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || ||||| || ||| | || ||| |||||| |||| || ||||| Sbjct 634614 CAGCGCTTGATCTTCGCCGGGAAGCAGCTCGAAGATGGTCGCACCCTCTCAGACTACAAT 634555 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 ||||| ||||| |||||| | ||| Sbjct 634554 ATTCAGAAAGAGTCCACCCTCCAT 634531 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| || || || || | || || || ||||| | | Sbjct 635027 ATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTCT 634968 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || ||||| || || ||||||||||| || || || ||||| ||| Sbjct 634967 GATACCATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCCCCCGACCAA 634908 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||||||||| || | || || ||||| | || || ||||| Sbjct 634907 CAGCGTTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACACTTTCAGACTACAAT 634848 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 ||||| || ||||||||| | ||| Sbjct 634847 ATTCAGAAGGAATCCACCCTTCAT 634824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419719037757880