Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq15 114 3e-20 seq3 111 3e-19 >seq15 Length=1133834 Score = 114 bits (126), Expect = 3e-20 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 || |||| ||||| ||| | || ||||| ||||| ||||| | || | |||||| | Sbjct 310151 TCCTTGGTCCCAACGGTTCCGGAAAGTCGACCCTCGTCAAATTGCTCATTGGCGACATGG 310092 Query 280234 AGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290 || ||| |||| || | | |||||||| |||||| || || | |||||| |||| Sbjct 310091 AGCCCAACAAGGGTGGTGAGATCTGGAAGCACCCCAACTTGGTTATCGGTTACGTTGCTC 310032 Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGT 280350 |||||||||||||||||||||| ||||| || |||| ||| || | | ||||| | | Sbjct 310031 AGCACGCTTTCCACCACATCGATAACCATCTCGACAAGACGCCGCTCGAGTACATGCTTT 309972 Query 280351 GGCGCTATGCAAGTGGGCAGGATCTGGAG 280379 |||| || | ||| ||||||| ||| Sbjct 309971 GGCGTTACCAGACTGGTGAGGATCTTGAG 309943 >seq3 Length=1746238 Score = 111 bits (122), Expect = 3e-19 Identities = 355/542 (65%), Gaps = 19/542 (4%) Strand=Plus/Plus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| |||||| || |||||||| | ||| || || | | ||||||||||| || Sbjct 1247229 GTGCATACCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAAGCCAGGCATCAGACC 1247288 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| ||||||| ||||||| |||||| || || || | | || || ||| Sbjct 1247289 ACGCTTCTTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAAGATGCCTTCCACAGC 1247348 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAACG---ACTTGTCCTGCGACAAGAACTTCTGTGC 252020 | |||| || | || || || || | | || | | || | |||| | || Sbjct 1247349 TGCAAATGCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGATATCCACTTGAGGGC 1247408 Query 252021 CCATGCTGCCTT---CTT--TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAG 252075 |||| | ||||| ||| | || |||||| || ||||| |||||||| ||| | Sbjct 1247409 CCATTCAGCCTTACGCTTGATACA-----GGGGATGGTCTCGATGGCATCAAAAAGATAC 1247463 Query 252076 TTCCGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGG 252135 | || || || | ||||| |||| | || | |||||||||||| | || ||||| Sbjct 1247464 TCGCGTTCAGCTTGGTCCTTGATGTAAGTGTCTATGAGGAGAGAGTACGTTTCGGAATGA 1247523 Query 252136 ATGGATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCC 252195 ||| ||| | | || || || ||||||| || || || | | ||||| Sbjct 1247524 ATGTTTTCCATCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGCCTGAACTTCG 1247583 Query 252196 GTGGAAAAGTTGTTTG-CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAA-GC 252253 |||||||| ||| | ||| ||| || | || ||||||||| | ||||| || || Sbjct 1247584 TTGGAAAAG-CGTTCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGCAAAAAAGGC 1247642 Query 252254 CAAGA-ATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCA 252312 ||| | ||| | ||| ||||| ||||||| ||| ||||| ||| ||| ||| Sbjct 1247643 CAAAACATG--CGAGATAAAGTGGCGCTCATTGTCATTGAGGCGTTCATTCCAATCGTAT 1247700 Query 252313 ATGTCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTAC 252372 ||||| | ||| | || || |||||||||| | | | ||||| |||||| Sbjct 1247701 ATGTCTTTGGAAAGATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTGCCTTTTTGTAC 1247760 Query 252373 AT 252374 || Sbjct 1247761 AT 1247762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027813727633432