Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 143 6e-29 seq1 141 2e-28 >seq2 Length=1435055 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||| | ||| || || |||| || ||| || || ||||| ||||||| | Sbjct 394823 CCTCCTCTGAGCCGAAGGACAAGGTGAAGTGTAGATTCCTTCTGAATATTGTAGTCGGAG 394882 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | |||||| || |||||||| ||||| ||||| | ||| Sbjct 394883 AGAGTGCGGCCATCCTCGAGTTGTTTGCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGG 394942 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || ||||| || || || || || | ||| || || || Sbjct 394943 ATGCCCTCCTTATCCTGAATCTTCGCCTTGACATTGTCAATGGTATCTGATGACTCGACC 395002 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || |||||||||||||| |||||||| Sbjct 395003 TCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 395049 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || | | || || || || || | || || ||||| ||| Sbjct 394631 TCTTTCTGTATGTTGTAATCTGACAATGTTCGGCCATCCTCAAGCTGCTTGCCTGCAAAG 394690 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||| |||||| | || || || || |||||||| || || || || || || Sbjct 394691 ATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCCTGAATCTTTGCCTTGACATTA 394750 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||||| |||||||| ||||||||||| || |||| |||||||||| Sbjct 394751 TCGATGGTGTCAGAGGATTCGACTTCGAGGGTGATCGTCTTGCCCGTCAAAGTCTTGACG 394810 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 394811 AAAATCTGCAT 394821 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || ||||| ||||| || || || |||||||| || |||| || ||||| ||||| Sbjct 395219 CCCTCTTTGTCCTGAATCTTGGCCTTCACGTTGTCGATAGTGTCCGATGATTCAACTTCC 395278 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | ||||||||||||||| || || ||||||||||| ||||||||| Sbjct 395279 AACGTGATCGTCTTCCCTGTGAGTGTCTTGACGAAGATCTGCATT 395323 >seq1 Length=1986796 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||| ||||| | ||| ||||| || ||||| | || || || |||||| Sbjct 634544 TCTTTCTGAATATTGTAGTCTGAGAGGGTGCGACCATCTTCGAGCTGCTTCCCGGCGAAG 634603 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||||||| ||||| ||||| || ||||||||||| || || ||||| Sbjct 634604 ATCAAGCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTA 634663 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| ||| || || ||||| || || ||||| ||||||| ||||||||| Sbjct 634664 TCAATGGTATCGGACGACTCGACCTCGAGAGTAATGGTCTTTCCGGTCAAAGTCTTGACA 634723 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 634724 AAGATTTGCAT 634734 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || |||||||| | ||| ||||| ||||| || || || | Sbjct 634229 CCCCCGCGCAGACGCAGAACGAGATGCAGCGTCGACTCTTTCTGGATGTTGTAATCAGAC 634288 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | |||||||| || ||||||| || ||||| | || Sbjct 634289 AGAGTGCGACCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCAGGAGGA 634348 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||||||||| || || || || || | ||| ||||| || Sbjct 634349 ATGCCCTCCTTGTCCTGGATTTTCGCCTTGACATTATCAATCGTGTCGGAAGATTCAACC 634408 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||| || ||||| |||||||| || || ||||| Sbjct 634409 TCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAAATTTGCAT 634455 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | || || || || | ||| ||| || ||||| |||||||||| Sbjct 635028 TCCACCGCGGAGACGGAGCACAAGGTGCAAGGTGGATTCCTTCTGGATGTTATAGTCGGA 635087 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTG 288356 |||||||| || ||||| | ||||| || |||||||| |||||||| || Sbjct 635088 AAGCGTGCGGCCATCTTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTG 635138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179627919707856