Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq2 102 8e-17 seq3 93.3 4e-14 seq20 84.2 2e-11 >seq1 Length=1986796 Score = 109 bits (120), Expect = 5e-19 Identities = 145/197 (74%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA--GTCCTCGAGTTGTTTACCGG 138478 || ||||| ||||| |||||||| | | ||| |||| ||| || ||||| || |||| Sbjct 634834 GATTCCTTCTGAATATTGTAGTC--TGAAAGTGTGCGACCGTCTTCAAGTTGCTTGCCGG 634891 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | |||||||||||| || || || ||||| ||||| ||| || ||| | Sbjct 634892 CAAAGATCAAACGCTGTTGGTCGGGGGGGATCCCTTCCTTGTCTTGGATCTTGGCTTTGA 634951 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | ||| || | ||||||||||| | || | || || ||||||| ||| Sbjct 634952 CATTG-TCAATGGTATCAGAAGACTCCACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTC 635010 Query 138598 TTTACAAAAATCTGCAT 138614 |||||||| || ||||| Sbjct 635011 TTTACAAAGATTTGCAT 635027 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || ||||||||||| | || | | ||| || || || || || | | | Sbjct 634036 CTCCTTCTGGATGTTGTAGTCAGAAAGCGTCCTCCCGTCTTCAAGCTGCTTGCCCGCAAA 634095 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| || ||||| ||||| || || || ||||| ||||| ||| | |||| || | | Sbjct 634096 GATCAGGCGCTGCTGGTCAGGCGGAATCCCTTCCTTGTC-CTGAATCTTTGCCTTCACGT 634154 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||||| | |||||||| || | ||| | ||| || || ||||| || || Sbjct 634155 TG-TCAATCGTGTCCGATGACTCCACTTCCAACGTAATCGTCTTGCCGGTCAGCGTCTTC 634213 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 634214 ACGAAAATCTGCAT 634227 >seq2 Length=1435055 Score = 102 bits (112), Expect = 8e-17 Identities = 143/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||| ||||||||| | ||| || |||||||||||||| || | Sbjct 394856 GATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGGCCATCCTCGAGTTGTTTGCCAGCG 394915 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| ||||| |||||||| ||||| || || || || || ||| | || | || Sbjct 394916 AAGATAAGACGTTGTTGGTCAGGAGGGATGCCCTCCTTATC-CTGAATCTTCGCCTTGAC 394974 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| || | ||||| ||||||| || | || || ||||| ||||| | Sbjct 394975 ATTG-TCAATGGTATCTGATGACTCGACCTCGAGAGTGATAGTCTTGCCAGTAAGAGTCT 395033 Query 138599 TTACAAAAATCTGCATG 138615 | || |||||||||||| Sbjct 395034 TGACGAAAATCTGCATG 395050 >seq3 Length=1746238 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 || || || ||| | || | ||||||||| | | | ||| || ||||||| |||||| Sbjct 1247065 GCTCTTCCYGTCAAACTCATTGGCATGAACTCAGACTTGATGCGCCAGTACATTGAGTTT 1247006 Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA-GCCAAAGTACTTCAACGCTCGCAATCC 52768 || || |||||||| | ||| |||||| | | ||| || || ||| ||||| Sbjct 1247005 GTTGCTGATCGTCTACTTGTGGCCCTCGGGAATGACAAGGT-CTATAACAAGACAAATCC 1246947 Query 52769 GTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 || || || ||| ||| |||||||| | |||||||| |||||||| ||||||||||| Sbjct 1246946 CTTCGACTTCATGGACATGATTTCGCTACAAGGCAAGACAAACTTTTTTGAGAAGCGAGT 1246887 >seq20 Length=1067518 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| |||| |||||| ||||| ||||| || |||| | Sbjct 158274 GACTCCTTCTGAATGTTGTAGTCACTCAGAGTACGGCCATCCTCAAGTTGCTTTCCGGCA 158333 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATAC 138511 |||| | ||| |||||||| || || |||| Sbjct 158334 AAGATCAAACGTTGTTGGTCAGGGGGAATAC 158364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496251531853440