Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 138 1e-27 >seq3 Length=1746238 Score = 138 bits (152), Expect = 1e-27 Identities = 347/523 (66%), Gaps = 11/523 (2%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||| ||| |||||||||||| ||||| ||||| Sbjct 1249473 GCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAGAACGTAAGACCA 1249414 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | ||||||||||| | |||||| || ||| ||| || |||||||| |||||| Sbjct 1249413 GGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCAGAGAAAAAGATC 1249354 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---A 127696 || || ||| ||||| |||| || || || ||||| | ||||| | ||| Sbjct 1249353 CCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAG---TGGACTGTTGATCCGAT 1249297 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 | ||| | | ||||| | || || || | ||||| || ||| | ||| || || Sbjct 1249296 ATCCATCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTTTCGATGGCGTCG 1249237 Query 127757 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 127816 || || | | |||| |||||| |||||||| |||| || ||| || || ||| Sbjct 1249236 AAAAGATGTGTGCGTTCTTCTGGATCCTTGATGTAGGTATCGATAAGTAAAGAGTACGTT 1249177 Query 127817 TCGCCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 127875 || ||| || ||| ||| || || | ||||||| | || || || ||| Sbjct 1249176 TCCGAGTGAACATTTTCCATCAT-AATTTGGAAGCCGTAGAAGCAACGTGCCTCAGCTAT 1249118 Query 127876 CTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 127935 ||||| ||| | ||| | | | || ||||||| || || || ||||| |||| Sbjct 1249117 CTGTATTTCACTAGAAAACCTCTCAAGGAGATTCTCATTCACGATGCCGTCGGAAGCAGC 1249058 Query 127936 AAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGT---CTTCCA 127992 |||||| || |||| | ||||| | |||| || ||| || | ||||| Sbjct 1249057 AAAAAATGCGAGGACGTGGGAAATGAAATATCGTTCGTTGGAGTTAAGTTTATAGTTCCA 1248998 Query 127993 GTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCAA 128035 || |||||| | ||||||||| || || || |||||| Sbjct 1248997 ATCCATGAGATCATGACAGAGATCTATTTCTTCGGCTGTCCAA 1248955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613493764192320