Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 seq2 95.1 1e-14 >seq1 Length=1986796 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || ||||||| || ||| || ||||| ||||| || || |||||||| | Sbjct 634240 ACGCAGAACGAGATGCAGCGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTGCGACC 634299 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||| || ||||| || |||||||| || ||||| | || | || |||||| Sbjct 634300 GTCTTCAAGCTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCAGGAGGAATGCCCTCCTT 634359 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||| ||| ||||| | | | ||||||| ||||| || || | |||||| Sbjct 634360 GTCCTGGATTTTCGCCTTGACATTATCAATCGTGTCGGAAGATTCAACCTCGAGCGTGAT 634419 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||||||||| || ||||| |||||||| Sbjct 634420 GGTCTTGCCCGTCAGCGTCTTGACAAAAATTTGCAT 634455 Score = 140 bits (154), Expect = 4e-28 Identities = 158/209 (76%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 46386 CCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGA 46445 |||||||||| || |||||||| ||||| |||||||| || || || | | |||| || | Sbjct 634020 CCAGATGCAACGTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGCGTCCTCCCGTCTTCAA 634079 Query 46446 GCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGA 46505 |||||||||| || || |||| |||||||||||| | ||| | | ||||||||| | Sbjct 634080 GCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGCGGAATCCCTTCCTTGTCCTGAA 634139 Query 46506 TCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||| ||| | ||| | | | |||||| || ||||| |||| ||| || || ||| Sbjct 634140 TCTTTGCCTTCA-CGTTGTCAATCGTGTCCGATGACTCCACTTCCAACGTAATCGTCTTG 634198 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| || || || || ||||| Sbjct 634199 CCGGTCAGCGTCTTCACGAAAATCTGCAT 634227 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || ||||||||||| || || ||||| | || ||||||||||| |||||||| Sbjct 634543 CTCTTTCTGAATATTGTAGTCTGAGAGGGTGCGACCATCTTCGAGCTGCTTCCCGGCGAA 634602 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||| || |||| || | || ||||||||| ||| || ||||| | Sbjct 634603 GATCAAGCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTT 634662 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || ||| ||| || || || | || ||||| || || |||| || || || Sbjct 634663 ATCAATGGTATCGGACGACTCGACCTCGAGAGTAATGGTCTTTCCGGTCAAAGTCTTGAC 634722 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 634723 AAAGATTTGCAT 634734 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || ||||||||||| || || ||||| |||| || || ||||||||||| || Sbjct 634837 TCCTTCTGAATATTGTAGTCTGAAAGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAG 634896 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||| ||||||| || | | |||||||| |||||| |||| | Sbjct 634897 ATCAAACGCTGTTGGTCGGGGGGGATCCCTTCCTTGTCTTGGATCTTGGCTTTGACATTG 634956 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || || ||||| |||| || ||||| ||||| |||| || || ||| Sbjct 634957 TCAATGGTATCAGAAGACTCCACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTCTTTACA 635016 Query 46583 AAGATTTGCATT 46594 |||||||||||| Sbjct 635017 AAGATTTGCATT 635028 >seq2 Length=1435055 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | || | || || || | |||| ||||| || |||||||||||||| Sbjct 394823 CCTCCTCTGAGCCGAAGGACAAGGTGAAGTGTAGATTCCTTCTGAATATTGTAGTCGGAG 394882 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || ||||| || ||||| ||||| || | || || ||||| | || Sbjct 394883 AGAGTGCGGCCATCCTCGAGTTGTTTGCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGG 394942 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||| ||| |||||| ||||| | | | || || || || || Sbjct 394943 ATGCCCTCCTTATCCTGAATCTTCGCCTTGACATTGTCAATGGTATCTGATGACTCGACC 395002 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| || ||||| || || || || || || || ||||| Sbjct 395003 TCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 395049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565226021279040