Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq18 132 2e-25 seq2 116 1e-20 seq1 104 9e-17 >seq18 Length=654792 Score = 132 bits (146), Expect = 2e-25 Identities = 247/362 (68%), Gaps = 3/362 (1%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 |||||||||||||| || ||||| || || |||||||| || || ||| || | Sbjct 486098 CCTGAAGAAATTTCGTCCATGGTACTCCTCAAGATGAAAGAGACTGCTGAATCTTACCTC 486039 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || | | || | | || || ||||||| ||||| || ||||||||| | || || Sbjct 486038 GGAACGACCGTATCCAACGCTGTCGTTACTGTCCCCGCCTACTTCAATGATTCCCAGCGT 485979 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 ||||| || || || || || ||| |||| || || |||||||| || || ||||| Sbjct 485978 CAAGCGACCAAGGACGCCGGTACCATTTCTGGATTGAACGTTCTTCGTATCATCAATGAG 485919 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaT 451483 || ||||| ||||| | || ||||| || | || || | || | ||| ||| Sbjct 485918 CCCACAGCTGCTGCCATTGCTTATGGTCTCGACAAG---AAGGTGACTGGCGAACGCAAT 485862 Query 451484 ATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGAT 451543 |||| | || ||| | |||||||||||| ||| || | || | ||||| || Sbjct 485861 GTTTTGATTTTCGATCTCGGTGGAGGAACTTTCGATGTCTCACTTCTCACCATTGAGGAA 485802 Query 451544 GGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || | || ||||| ||||| || |||||||| || | || ||||||||| | ||| Sbjct 485801 GGTATCTTCGAAGTCAAGGCTACTGCCGGTGATACCCACTTGGGTGGTGAAGATTTCGAT 485742 Query 451604 AA 451605 || Sbjct 485741 AA 485740 >seq2 Length=1435055 Score = 116 bits (128), Expect = 1e-20 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||| || || || || || || || || ||||| ||| Sbjct 394821 ATGCAGATTTTCGTCAAGACTTTGACGGGCAAGACGATCACCCTCGAAGTCGAATCCTCT 394762 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || ||| ||||| |||||||| || ||||||||||||||| Sbjct 394761 GACACCATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAA 394702 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || || |||| || || ||||| ||||| |||| ||| | ||||| || Sbjct 394701 CAACGTCTGATCTTTGCAGGCAAGCAGCTTGAGGATGGCCGAACATTGTCAGATTACAAC 394642 Query 391230 AT 391231 || Sbjct 394641 AT 394640 >seq1 Length=1986796 Score = 104 bits (114), Expect = 9e-17 Identities = 151/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || ||||||| || || ||||| || || || || || || Sbjct 635028 AATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTC 634969 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| || || ||||| |||||||| || || || || || Sbjct 634968 TGATACCATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCCCCCGACCA 634909 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| ||||| || || | || || ||||||||||| || | || | | || || || Sbjct 634908 ACAGCGTTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACACTTTCAGACTACAA 634849 Query 391229 TATTGATAAGGATGCAACACTTCA-CTTAGTA 391259 |||| | ||||| | || ||||| ||| ||| Sbjct 634848 TATTCAGAAGGAATCCACCCTTCATCTTGGTA 634817 Score = 98.7 bits (108), Expect = 4e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || ||||| || || || || || || || |||||||| || Sbjct 634455 ATGCAAATTTTTGTCAAGACGCTGACGGGCAAGACCATCACGCTCGAGGTTGAATCTTCC 634396 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || ||||| || || ||||| || ||||||||||| ||| Sbjct 634395 GACACGATTGATAATGTCAAGGCGAAAATCCAGGACAAGGAGGGCATTCCTCCTGACCAA 634336 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || || || | || ||||| |||||||| || | ||| || | ||||| || Sbjct 634335 CAACGCTTGATCTTTGCCGGAAAACAGCTTGAAGACGGTCGCACTCTGTCTGATTACAAC 634276 Query 391230 AT 391231 || Sbjct 634275 AT 634274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975674050061216