Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq18 105 5e-17 seq39 93.3 3e-13 >seq18 Length=654792 Score = 105 bits (116), Expect = 5e-17 Identities = 220/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 517974 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 518033 || |||| | || | |||||| || | |||| | | || ||||| ||||| |||| Sbjct 485690 CTTTTTTGTTCTTGCGCTTGAATTCCTGAACAAAGTGGTTGACGAGACGGTTATCGAAAT 485749 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 518093 ||||||| ||||| | |||| || | ||||| | |||| ||| | || || |||| Sbjct 485750 CTTCACCACCCAAGTGGGTATCACCGGCAGTAGCCTTGACTTCGAAGATACCTTCCTCAA 485809 Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATT 518152 | | ||| | ||||| ||||| ||||| | ||| ||||| | ||||| | || Sbjct 485810 TGGTGAGAAGTGAGACATCGAAAGTTCCTCCACCGAGATCGAAAATCAAAACATTGCGTT 485869 Query 518153 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 518212 ||| || || || |||||||| |||| |||||||| || || ||||| || Sbjct 485870 CGCCAGTC-ACCTTCTTGTCGAGACCATAAGCAATGGCAGCAGCTGTGGGCTCATTGATG 485928 Query 518213 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 518272 || | | ||| || | |||| ||| | || || || || || ||||| | || ||| Sbjct 485929 ATACGAAGAACGTTCAATCCAGAAATGGTACCGGCGTCCTTGGTCGCTTGACGCTGGGAA 485988 Query 518273 TCGTTAAAATATGCAGGAACAGTAA 518297 || || || || || || ||||||| Sbjct 485989 TCATTGAAGTAGGCGGGGACAGTAA 486013 Score = 87.8 bits (96), Expect = 1e-11 Identities = 118/163 (72%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 518521 ATCAAAAATA-GTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 || ||| ||| |||||| ||||| || || | |||| ||| || ||||| || || | Sbjct 486342 ATGAAACATACGTATTGTGAGGATTCATCGCGACCTGATTTTTTGCGGCATCGCCGATGA 486401 Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 || | || | |||| || || ||||| || || || ||||||||||| || || || | Sbjct 486402 GACGCTCACTGTCTGAGAAGGAGACATAGGAAGGGGTGGTGCGATTACCCTGGTCGTTGG 486461 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 | || || ||||| | | |||||||| || || |||||||| Sbjct 486462 CGATGATCTCAACGCGATCGTTTTGCCAGACGCCGACACAACT 486504 >seq39 Length=420478 Score = 93.3 bits (102), Expect = 3e-13 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTA--TCAA 518174 ||||| || || | ||| ||||| || || ||| |||| | || |||| |||| Sbjct 212799 GTTCCTCCTCCAAGATCGAAAATGAGGACGTTC--TTCTCAGCTTTTGTTTGACGGTCAA 212742 Query 518175 GACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAG 518234 ||||||| |||| || ||||| || ||||| ||||| || | | |||| ||| |||| Sbjct 212741 GACCATAGGCAATGGCGGCAGCGGTAGGTTCGTTAATGATACGAAGGACATCAAGGCCAG 212682 Query 518235 CAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 518293 |||| || |||||||| ||||| | | || |||||||| || ||||| |||||| Sbjct 212681 CAATGGCACCAGCATCTTTGGTGGCCAGACGCTGAGAATCGTTGAAGTATGCGGGAACA 212623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780735459988912