Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2 118 9e-21 seq39 96.9 3e-14 seq18 91.5 1e-12 seq1 86.0 5e-11 >seq2 Length=1435055 Score = 118 bits (130), Expect = 9e-21 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||| || || ||||| ||||| ||| ||| || ||||||||| || | ||||| Sbjct 394829 CTGAGCCGAAGGACAAGGTGAAGTGTAGATTCCTTCTGAATATTGTAGTCGGAGAGAGTG 394888 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||| || |||||||| || || || ||||| | ||| || |||||||| || || Sbjct 394889 CGGCCATCCTCGAGTTGTTTGCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGGATGCCC 394948 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAG 563432 || ||||| ||||| || || || ||||| ||||| | ||| | | ||||| Sbjct 394949 TCCTTATCCTGAATCTTCGCCTTGACATTGTCAATGGTATCTGA-TGACTCGACCTCGAG 395007 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| | ||| || ||||||||||| || |||||||| ||||| Sbjct 395008 AGTGATAGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 395049 >seq39 Length=420478 Score = 96.9 bits (106), Expect = 3e-14 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| || ||||| || || || || || |||| || || ||||||||||| ||||| Sbjct 212623 TGTTCCCGCATACTTCAACGATTCTCAGCGTCTGGCCACCAAAGATGCTGGTGCCATTGC 212682 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| ||| |||| |||||||| || || |||||||| ||||| || |||| ||||| || Sbjct 212683 TGGCCTTGATGTCCTTCGTATCATTAACGAACCTACCGCTGCCGCCATTGCCTATGGTCT 212742 Query 550531 TGA 550533 ||| Sbjct 212743 TGA 212745 >seq18 Length=654792 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || ||||| || || |||||||| || || || || || ||| Sbjct 486011 ACTGTCCCCGCCTACTTCAATGATTCCCAGCGTCAAGCGACCAAGGACGCCGGTACCATT 485952 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | || ||||||||||| |||||||| || || |||||||| |||| ||||| Sbjct 485951 TCTGGATTGAACGTTCTTCGTATCATCAATGAGCCCACAGCTGCTGCCATTGCTTATGGT 485892 Query 550529 CTTGATAA 550536 || || || Sbjct 485891 CTCGACAA 485884 >seq1 Length=1986796 Score = 86.0 bits (94), Expect = 5e-11 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || || ||||| || || ||| | | ||| || |||||||||| ||||| | Sbjct 634238 AGACGCAGAACGAGATGCAGCGTCGACTCTTTCTGG--ATGTTGTAATCAGACAGAGTGC 634295 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||||| |||||||||||||| || | | ||| || ||||||||||| || | Sbjct 634296 GACCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCAGGAGGAATGCCCT 634355 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGA 563433 | || || || ||||| || || ||||| || || | || | | ||||| Sbjct 634356 CCTTGTCCTGGATTTTCGCCTTGACATTATCAATCGTGTC-GGAAGATTCAACCTCGAGC 634414 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | || || || || || || || || |||||||||||| Sbjct 634415 GTGATGGTCTTGCCCGTCAGCGTCTTGACAAAAATTTGCATA 634456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029203346338480