Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq2 102 6e-17 >seq1 Length=1986796 Score = 109 bits (120), Expect = 4e-19 Identities = 151/210 (72%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 48558 ACCAA-ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||| ||| || ||| || || ||||||||||| || || || | ||| |||| || Sbjct 634818 ACCAAGATGAAGGGTGGATTCCTTCTGAATATTGTAGTCTGAAAGTGTGCGACCGTCTTC 634877 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | ||||| |||||||| |||| |||||||| || | ||| | || |||||||| Sbjct 634878 AAGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCGGGGGGGATCCCTTCCTTGTCTTG 634937 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||| ||| ||| | | | || || | ||||||||||| ||||| || || Sbjct 634938 GATCTTGGCTTTGACATTGTCAATGGTATCAGAAGACTCCACCTCCAGGGTAATGGTCTT 634997 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| |||||||| || ||||| Sbjct 634998 GCCAGTCAAAGTCTTTACAAAGATTTGCAT 635027 Score = 105 bits (116), Expect = 5e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 48559 CCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCA 48618 ||| ||| | ||||||||| || || || ||||| ||||| || | | |||| || | Sbjct 634020 CCAGATGCAACGTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGCGTCCTCCCGTCTTCAA 634079 Query 48619 ACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAA 48678 |||||| || ||||| ||||| ||||| || || | |||| || |||||||| || Sbjct 634080 GCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGCGGAATCCCTTCCTTGTCCTGAA 634139 Query 48679 TCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTC 48738 ||||| || || | | | || || | |||||| |||| ||||||||| || | Sbjct 634140 TCTTTGCCTTCACGTTGTCAATCGTGTCCGATGACTCCACTTCCAACGTAATCGTCTTGC 634199 Query 48739 CCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | |||| || || || ||||||||||| Sbjct 634200 CGGTCAGCGTCTTCACGAAAATCTGCAT 634227 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || | ||| ||||| |||||| || || ||||||||||| ||| | ||| Sbjct 634238 AGACGCAGAACGAGATGCAGCGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTGCGA 634297 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||| || |||||||| |||| || ||||| || | |||| ||||||| Sbjct 634298 CCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCAGGAGGAATGCCCTCC 634357 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || ||| | | | | || || | || ||||| | ||| Sbjct 634358 TTGTCCTGGATTTTCGCCTTGACATTATCAATCGTGTCGGAAGATTCAACCTCGAGCGTG 634417 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||||| || || |||||||| ||||| Sbjct 634418 ATGGTCTTGCCCGTCAGCGTCTTGACAAAAATTTGCAT 634455 Score = 105 bits (116), Expect = 5e-18 Identities = 150/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 48558 ACCAA-ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||| ||| || ||| |||||| ||||||||||| || || || | ||| | || || Sbjct 634525 ACCAAGATGGAGGGTGGACTCTTTCTGAATATTGTAGTCTGAGAGGGTGCGACCATCTTC 634584 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | |||||| ||||| || |||| ||||||||||| | || | ||| |||||||| Sbjct 634585 GAGCTGCTTCCCGGCGAAGATCAAGCGCTGTTGATCGGGAGGGATGCCTTCCTTGTCCTG 634644 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 || || || || | | | | || |||| ||| ||||| | ||||| || || Sbjct 634645 GATTTTGGCCTTGACGTTATCAATGGTATCGGACGACTCGACCTCGAGAGTAATGGTCTT 634704 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| |||||||| || ||||| || ||||| Sbjct 634705 TCCGGTCAAAGTCTTGACAAAGATTTGCAT 634734 >seq2 Length=1435055 Score = 102 bits (112), Expect = 6e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 48557 CACCAA-ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGT 48615 |||||| ||| || || |||||| || || |||||||| || | |||| | || | Sbjct 394611 CACCAAGATGCAGAGTCGACTCTTTCTGTATGTTGTAATCTGACAATGTTCGGCCATCCT 394670 Query 48616 CCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGC 48675 | | |||||| || ||||| ||||| || |||||||| | |||| |||||||| || Sbjct 394671 CAAGCTGCTTGCCTGCAAAGATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCCT 394730 Query 48676 TAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTT 48735 ||||||| || ||| | | | | || || | || || || | || ||||| | Sbjct 394731 GAATCTTTGCCTTGACATTATCGATGGTGTCAGAGGATTCGACTTCGAGGGTGATCGTCT 394790 Query 48736 TTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | ||||||||||| || || ||||||||||| Sbjct 394791 TGCCCGTCAAAGTCTTGACGAAAATCTGCAT 394821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380929466029896