Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 125 2e-23 seq3 98.7 3e-15 seq117 91.5 4e-13 >seq4 Length=1469267 Score = 125 bits (138), Expect = 2e-23 Identities = 353/520 (68%), Gaps = 40/520 (8%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 || || || ||||| |||||||| ||||| || |||||||||||||||||||| || Sbjct 1345348 CCATGAGATATCATGCAATCACGTTCCATCTCTCCGAAACGAAGACCACCATCTCGGCTT 1345407 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAG-ATT--AACCATAGGACCGATGGAGCGGCTATGT 251604 |||||||| |||| || | || || ||| ||| |||||| | |||| | || Sbjct 1345408 CTACCCTCRACAGGTTGCCTTGTTAGGATTTGAAC---AGGACC--TCGAGCACGTGAGT 1345462 Query 251605 TG--CTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT-- 251660 | |||||||| ||||||||||| | ||||||||| | | ||||||| | || Sbjct 1345463 GGATCTTATCATCAACCATATGCTTCAAACGCTGGTAATACGTTGGACCGAGATAAATTT 1345522 Query 251661 --GCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGAT 251718 ||| |||| ||||| |||||| | | | ||||||||| || ||| || Sbjct 1345523 GAGCTTGAAG---TTTGCG-TCCAGTATGCCCATGATACATAACCTCCAAACCACGTGAC 1345578 Query 251719 TCATAACCAAGTTTCTGTAGCTCTG--AAG-CAATATC-AC-CAATCTTGA-ATTTGCTA 251772 | |||||| ||||||| || | ||| | ||| || | | | | | | | | Sbjct 1345579 TGATAACC---TTTCTGT--CTGAGGAAAGTCGATACAGACTCGACCGTAAGRTCCGTGA 1345633 Query 251773 AAACTGGTGCCGTCTCCGTAAAGACCCATTTGAAT--CAACACTTTGCC--TAAAAGTGT 251828 || || ||| |||||| | | || ||| | | |||| ||| | |||| | Sbjct 1345634 AAGGTGTTGC-GTCTCCCTCATTTCCGATTAGCGTAGCAAC-CTTGGAGAGTAAACAT-- 1345689 Query 251829 CTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTC 251888 || ||| ||| | || ||||||||| ||| ||||| || ||||| |||||||| || Sbjct 1345690 -TCGACCAGATGGCCAATGGTCATACGAGAGGGGATAGCGTGCGGATTAATGATGATATC 1345748 Query 251889 GGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAG 251947 || | ||| ||||||||||||||||| |||| || | ||| || |||| |||| Sbjct 1345749 AGGGACAATTCCTTCAGCAGTGAAGGGCATGTCCTCTT-GACGGTAAGTGATTCCTATAG 1345807 Query 251948 TTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | ||||| || || || ||||| |||||||| ||||| Sbjct 1345808 TACCCTTCTGACCATGGCGAGAGGCAAACTTATCTCCAAT 1345847 >seq3 Length=1746238 Score = 98.7 bits (108), Expect = 3e-15 Identities = 245/360 (68%), Gaps = 14/360 (4%) Strand=Plus/Plus Query 133304 GCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACA 133363 || || || ||| ||| || || | || ||| |||||||||| | || || || Sbjct 1249121 GCTGAGGCACGTTGCTTCTACGGCTTCCAAATTATGATGGAAAATGTTCACTCGGAAACG 1249180 Query 133364 TATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAA-GCACAAA-CTATTCA 133421 || ||| || || ||||| |||||||| ||| | | |||| ||||| | || ||| Sbjct 1249181 TACTCTTTACTTATCGATACCTACATCAAGGATCCAGA--AGAACGCACACATCTTTTCG 1249238 Query 133422 ACGCCATTAGCGAATT--TC-CTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGA 133478 ||||||| |||| || | ||| |||| ||| |||| |||||| | | ||||| Sbjct 1249239 ACGCCAT---CGAAACCATCTCATGTGTTAAGCGTAAAGCTGATTGGGCTCTCAGATGGA 1249295 Query 133479 TCCAGGA-CAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGC 133537 | ||| ||| || | | ||||||| || ||||||||||| || | ||||| || Sbjct 1249296 TATCGGATCAACAGTCC-ACTTTTGCTGAACGACTCGTTGCTTTCGCCGCTGTAGAAGGG 1249354 Query 133538 AtttttttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACC 133596 || |||||| ||| | || |||| |||| || ||| | || ||||| || | | || Sbjct 1249355 ATCTTTTTCTCTGG-GTCTTTTGCTGCTATCTTCTGGATCAAGAAGCGGGGATTAATGCC 1249413 Query 133597 TGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 ||| || || || || ||||| || | ||||||| |||||||| || ||||| Sbjct 1249414 TGGTCTTACGTTCTCCAATGAACTCATCAGCCGCGACGAGGGCCTTCACACGGATTTTGC 1249473 >seq117 Length=210125 Score = 91.5 bits (100), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| ||||| | ||||||||||||||||| || | || || || || Sbjct 69611 TCTTCCAACGCCTTGACGAGGCGACGCTGAATATAACCCGTCTCGGCGGTCTTGACGGCA 69670 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 || ||||| | ||| ||||||| ||||||| || ||||| | ||| | ||| || Sbjct 69671 GTGTCAATCAAACCCTCACGACCGGCCATAGCGTGAAAGAAGAACTCCTGAGGTGTCAGA 69730 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | || | ||||| |||||||||| || || || || || ||| |||| ||| || Sbjct 69731 CCTCGAAGATAGGAGTTCTCAACGAACCCGCGAGCTTCAGGAGAAAAGTCGTCCTTRGTG 69790 Query 302752 AAGTGTGGCAGGGT 302765 || || || || || Sbjct 69791 AAATGAGGGAGAGT 69804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471784561374424