Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 >seq2 Length=1435055 Score = 114 bits (126), Expect = 1e-20 Identities = 157/213 (74%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 29577 CACCAA-ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATCA 29634 |||||| ||| || || || ||||| || ||||| ||||| | ||||| | || ||| Sbjct 394611 CACCAAGATGCAGAGTCGACTCTTTCTGTATGTTGTAATCTGACAATGTT-CGGCCATCC 394669 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || ||||| ||| | |||| | ||| ||||| || ||||||||||| || || Sbjct 394670 TCAAGCTGCTTGCCTGCAAAGATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCC 394729 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| |||| |||||| | || | |||||||| ||| ||||| || || || || Sbjct 394730 TG-AATCTTTGCCTTGACATTATCGATGGTGTCAGAGGATTCGACTTCGAGGGTGATCGT 394788 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || || |||||||| Sbjct 394789 CTTGCCCGTCAAAGTCTTGACGAAAATCTGCAT 394821 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | || || || | ||||| || ||||| || ||||| || || || | Sbjct 394823 CCTCCTCTGAGCCGAAGGACAAGGTGAAGTGTAGATTCCTTCTGAATATTGTAGTCGGAG 394882 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| ||||||||||||||||| | || | | ||| || || || || Sbjct 394883 AGAGTGCGGCCATCCTCGAGTTGTTTGCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGG 394942 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| || || || ||| || | |||||| | || | || || || || || Sbjct 394943 ATGCCCTCCTTATCCTG-AATCTTCGCCTTGACATTGTCAATGGTATCTGATGACTCGAC 395001 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| |||||||| | || || || || |||||||| Sbjct 395002 CTCGAGAGTGATAGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 395049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385210974607032