Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq18 105 5e-17 seq39 93.3 3e-13 seq2 87.8 1e-11 >seq18 Length=654792 Score = 105 bits (116), Expect = 5e-17 Identities = 220/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 282141 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 282200 || |||| | || | |||||| || | |||| | | || ||||| ||||| |||| Sbjct 485690 CTTTTTTGTTCTTGCGCTTGAATTCCTGAACAAAGTGGTTGACGAGACGGTTATCGAAAT 485749 Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 282260 ||||||| ||||| | |||| || | ||||| | |||| ||| | || || |||| Sbjct 485750 CTTCACCACCCAAGTGGGTATCACCGGCAGTAGCCTTGACTTCGAAGATACCTTCCTCAA 485809 Query 282261 GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATT 282319 | | ||| | ||||| ||||| ||||| | ||| ||||| | ||||| | || Sbjct 485810 TGGTGAGAAGTGAGACATCGAAAGTTCCTCCACCGAGATCGAAAATCAAAACATTGCGTT 485869 Query 282320 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 282379 ||| || || || |||||||| |||| |||||||| || || ||||| || Sbjct 485870 CGCCAGTC-ACCTTCTTGTCGAGACCATAAGCAATGGCAGCAGCTGTGGGCTCATTGATG 485928 Query 282380 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 282439 || | | ||| || | |||| ||| | || || || || || ||||| | || ||| Sbjct 485929 ATACGAAGAACGTTCAATCCAGAAATGGTACCGGCGTCCTTGGTCGCTTGACGCTGGGAA 485988 Query 282440 TCGTTAAAATATGCAGGAACAGTAA 282464 || || || || || || ||||||| Sbjct 485989 TCATTGAAGTAGGCGGGGACAGTAA 486013 >seq39 Length=420478 Score = 93.3 bits (102), Expect = 3e-13 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTA--TCAA 282341 ||||| || || | ||| ||||| || || ||| |||| | || |||| |||| Sbjct 212799 GTTCCTCCTCCAAGATCGAAAATGAGGACGTTC--TTCTCAGCTTTTGTTTGACGGTCAA 212742 Query 282342 GACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAG 282401 ||||||| |||| || ||||| || ||||| ||||| || | | |||| ||| |||| Sbjct 212741 GACCATAGGCAATGGCGGCAGCGGTAGGTTCGTTAATGATACGAAGGACATCAAGGCCAG 212682 Query 282402 CAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 282460 |||| || |||||||| ||||| | | || |||||||| || ||||| |||||| Sbjct 212681 CAATGGCACCAGCATCTTTGGTGGCCAGACGCTGAGAATCGTTGAAGTATGCGGGAACA 212623 >seq2 Length=1435055 Score = 87.8 bits (96), Expect = 1e-11 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || ||||||||||| ||||| || || ||| | | ||| | | ||||| Sbjct 200062 TGTACTCTGATTTTGACAGAAGGAGACTCTGCCAAAGCTCTTGCTGTCGCGGGCCTCGGC 200003 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 ||| ||||||| ||||||| || || ||||| || | || || || ||||||||| | Sbjct 200002 GTTGTTGGAAGGGATTATTTCGGTGTCTTCCCTCTCCGTGGCAAGCTATTGAATGTTCGC 199943 Query 400417 GATGCTAGTCCTaaaaaaaTTGCCGATAATGAGGAAATTACAGCA-ATCaaaaaaaT 400472 || || || | | | |||| | || ||||||||| ||| | ||||||||||| Sbjct 199942 GAAGCAAGACATGACCAAATCATGAAGAACGAGGAAATT-CAGAATATCAAAAAAAT 199887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740544384203952