Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 206 4e-48 >seq3 Length=1746238 Score = 206 bits (228), Expect = 4e-48 Identities = 388/569 (68%), Gaps = 15/569 (3%) Strand=Plus/Plus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || |||||||| || | |||||||| | ||| || | || || || || || | Sbjct 1247215 CAAGCGAAGTCGGTGTGCATACCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAAG 1247274 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 |||||||| ||||||||||| ||||||||||| || | ||||| || || ||||||||| Sbjct 1247275 CCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAAG 1247334 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTATGT 39793 |||||||| || ||||||||||| || | || || || | | | | | | | | Sbjct 1247335 ATGCCTTCCACAGCTGCAAATGCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGAT 1247394 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 |||||||| | ||||| ||||| || ||| | ||| || || || || || |||| | Sbjct 1247395 ATCCACTTGAGGGCCCATTCAGCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATCA 1247454 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 || ||||| | |||| | || || | || || ||||| | ||| ||| || Sbjct 1247455 AAAAGATACTCGCGTTCAGCTTGGTCCTTGATGTAAGTGTCTATGAGGAGAGAGTACGTT 1247514 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || ||||| |||||||| ||| || ||||| || || || || | ||||||| Sbjct 1247515 TCGGAATGAATGTTTTCCATCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGCC 1247574 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || || || |||| | ||| | | ||||| || || || ||||| ||| ||| Sbjct 1247575 TGAACTTCGTTGGAAAAGCGTTCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGCA 1247634 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA-------ATTTATT 40086 ||||| ||||| ||||| ||||| | |||| ||||| || ||| Sbjct 1247635 AAAAAGGCCAAAACATGCGAGATAAAGTGGCGCTCAT----TGTCATTGAGGCGTTCATT 1247690 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 ||| || | || ||||| || | ||| | || || || ||||| || || || ||||| Sbjct 1247691 CCAATCGTATATGTCTTTGGAAAGATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTGC 1247750 Query 40147 CTTTTTGTACATGTTCCATATAT-CACGA 40174 |||||||||||| | |||||| | ||||| Sbjct 1247751 CTTTTTGTACATCTGCCATATCTACACGA 1247779 Score = 197 bits (218), Expect = 2e-45 Identities = 372/543 (69%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 || |||||||| || | || || | ||| || || || || || |||||||||| || Sbjct 1249461 TGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAGAACGTAAGACCAGGCATTAATCCC 1249402 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 ||||| |||| ||| || || ||||||||||| ||||| || ||||| |||||||| || Sbjct 1249401 CGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCAGAGAAAAAGATCCCTTCTACAGCG 1249342 Query 39752 GCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCTGTGCC 39808 || || ||||| |||| || | || | | | | || |||||| | | ||| Sbjct 1249341 GCGAAAGCAACGAGTCGTTCAGCAAAAGTGGACTGTTGATCCGATATCCATCTGAGAGCC 1249282 Query 39809 CAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGT-TT 39867 ||||||||||| ||| ||||| | || ||||| || || | || |||| ||| Sbjct 1249281 CAATCAGCTTTACGCTTAACACATGAGATGGTTTCGATGGCGTCGAAAAGAT-GTGTGCG 1249223 Query 39868 TTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTT 39927 ||| || ||| || | || ||||| || | | | ||| |||| || || | || Sbjct 1249222 TTCTTCTGGATCCTTGATGTAGGTATCGATAAGTAAAGAGTACGTTTCCGAGTGAACATT 1249163 Query 39928 TTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACA 39987 ||| ||| || || || ||||| || || | ||| |||| || |||| || | | Sbjct 1249162 TTCCATCATAATTTGGAAGCCGTAGAAGCAACGTGCCTCAGCTATCTGTATTTCACTAGA 1249103 Query 39988 AAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATAC 40047 ||| || || | ||| |||||||| || || || ||| ||||||||||| | || Sbjct 1249102 AAACCTCTCAAGGAGATTCTCATTCACGATGCCGTCGGAAGCAGCAAAAAATGCGAGGAC 1249043 Query 40048 ATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA---TTCCAGTCATTGATATCTTT 40104 || ||| |||||| ||| | || | | |||| ||||| || ||| ||| | Sbjct 1249042 GTGGGAAATGAAATATCGTTCGTTGGAGTTAAGTTTATAGTTCCAATCCATGAGATCATG 1248983 Query 40105 TGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCA 40164 | | ||||| |||||| ||||||||||| || |||| ||||| ||| || | ||||| Sbjct 1248982 ACAGAGATCTATTTCTTCGGCTGTCCAAAATGATGCCTGTGCCTGTTTATAAAAATTCCA 1248923 Query 40165 TAT 40167 ||| Sbjct 1248922 TAT 1248920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686893756697280