Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3 237 1e-57 >seq3 Length=1746238 Score = 237 bits (262), Expect = 1e-57 Identities = 393/565 (70%), Gaps = 22/565 (4%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 |||||||| ||||||||||| ||| | || || || ||||| || || || | ||| | Sbjct 1247771 ATATGGCAGATGTACAAAAAGGCAGAAGCATCCTTCTGGACGGCCGAGGAGATGGATCTT 1247712 Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAA-------CATTTTAT 43842 | |||||| || |||||| || || || ||| | || || ||||| Sbjct 1247711 TCCAAAGACATATACGATTGGAATG----AACGCCTCAATGACAATGAGCGCCACTTTAT 1247656 Query 43843 ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAG 43902 || |||||||| ||||||||||| ||| || || ||||| ||||| | || Sbjct 1247655 CTCGCATGTTTTGGCCTTTTTTGCTGCTTCCGATGGCATCGTCAACGAAAACCTTGTCGA 1247596 Query 43903 TCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 || ||| | | |||||||| | ||||| || || || ||||| |||||||| Sbjct 1247595 ACGCTTTTCCAACGAAGTTCAGGCCGCTGAAGCTCGCTGCTTCTATGGTTTTCAAATCAT 1247536 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG 44022 || ||||| |||||||| |||| |||| ||| || ||||| || |||||||| || Sbjct 1247535 GATGGAAAACATTCATTCCGAAACGTACTCTCTCCTCATAGACACTTACATCAAGGACCA 1247476 Query 44023 ----GCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATA 44078 | ||| || | ||| | ||| |||| || || || | || || || | || Sbjct 1247475 AGCTGAACGCGA-GTATC---TTTTTGATGCCATCGAGACCATCCCCTGTATCAAGCGTA 1247420 Query 44079 AAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTTG 44135 | || || |||||||| || |||||| | || | ||| || | |||||| | | Sbjct 1247419 AGGCTGAATGGGCCCTCAAGTGGATATCTGACAAGAACTCTACATTCGCCGAACGATTGG 1247360 Query 44136 TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGT 44195 |||| ||||||| |||||||||||| ||||||||||| || ||||| | || |||||| Sbjct 1247359 TCGCATTTGCAGCTGTGGAAGGCATCTTCTTTTCAGGCTCCTTTGCATCAATCTTTTGGC 1247300 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATG 44255 | ||||| || ||| |||||||||| || || || ||||||||| | || |||||||||| Sbjct 1247299 TCAAGAAGCGTGGTCTGATGCCTGGCTTAACCTTCTCAAATGAGCTTATCAGTCGTGATG 1247240 Query 44256 AAGGCTTACATTGCGATTTTGCTTG 44280 | || | || ||| || ||||| Sbjct 1247239 AGGGTATGCACACCGACTTCGCTTG 1247215 Score = 161 bits (178), Expect = 8e-35 Identities = 385/571 (67%), Gaps = 22/571 (4%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 |||||| | | || ||| | |||||||| |||||||||||||| |||||| | ||| | Sbjct 1248920 ATATGGAATTTTTATAAACAGGCACAGGCATCATTTTGGACAGCCGAAGAAATAGATCTC 1248979 Query 43790 ACTAAAGACTTAGCACATTGGATTGCAT---TAAA----ACCACAA-GAAAAACATTTTA 43841 | | || | ||| |||||| | |||| || ||| ||| | |||| | Sbjct 1248980 TGTCATGATCT----CAT-GGATTGGAACTATAAACTTAACTCCAACGAACGATATTTCA 1249034 Query 43842 TATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTA 43901 | || || | || ||||||||||| |||||| || || ||||| ||| | || Sbjct 1249035 TTTCCCACGTCCTCGCATTTTTTGCTGCTTCCGACGGCATCGTGAATGAGAATCTCCTTG 1249094 Query 43902 GTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTG 43961 ||||| | ||| | || || | || ||||| || || || || || |||||| Sbjct 1249095 AGAGGTTTTCTAGTGAAATACAGATAGCTGAGGCACGTTGCTTCTACGGCTTCCAAATTA 1249154 Query 43962 CCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATG 44021 || |||||| |||| ||||||| |||| | | || || ||||| |||||||| ||| Sbjct 1249155 TGATGGAAAATGTTCACTCGGAAACGTACTCTTTACTTATCGATACCTACATCAAGGAT- 1249213 Query 44022 GGCACGAGAA-GCATCGAT-TGTTTAATGCGATAGAAA-CAGTACCTGCGATTAAACATA 44078 || |||| ||| || | || | || || |||| || | || | |||| | || Sbjct 1249214 -CCAGAAGAACGCACACATCTTTTCGACGCCATCGAAACCATCTCATGTG-TTAAGCGTA 1249271 Query 44079 AAGCAGACTGGGCCCTTAAATGGATA---AATTCAAATGATTCTTTTGGAGAACGACTTG 44135 |||| || ||||| || | ||||||| || | | |||||| |||||||| | Sbjct 1249272 AAGCTGATTGGGCTCTCAGATGGATATCGGATCAACAGTCCACTTTTGCTGAACGACTCG 1249331 Query 44136 TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGT 44195 | || || || | ||| ||||| || || || || || || ||||| || || || ||| Sbjct 1249332 TTGCTTTCGCCGCTGTAGAAGGGATCTTTTTCTCTGGGTCTTTTGCTGCTATCTTCTGGA 1249391 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATG 44255 | ||||| || || || |||||||| | ||||| || ||||| | || || || || | Sbjct 1249392 TCAAGAAGCGGGGATTAATGCCTGGTCTTACGTTCTCCAATGAACTCATCAGCCGCGACG 1249451 Query 44256 AAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 | ||| | || |||||||| || |||| Sbjct 1249452 AGGGCCTTCACACGGATTTTGCATGTCTGTT 1249482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447513320760