Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 105 8e-18 >seq3 Length=1746238 Score = 105 bits (116), Expect = 8e-18 Identities = 339/513 (66%), Gaps = 15/513 (3%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| | ||||||||| || ||||| |||||||||||| || || ||||| ||||| Sbjct 1247229 GTGCATACCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAAGCCAGGCATCAGACC 1247288 Query 122730 CCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788 |||||||| | |||| | || | ||| || || || || |||||||| || |||||| Sbjct 1247289 ACGCTTCTTGAGCCAAAAGATTGATGCA-AAGGAGCCTGAAAAGAAGATGCCTTCCACAG 1247347 Query 122789 ACGCAAACGCAAAAAGGCGTTCGGCGAA-GGAGCGAGACTTTGCATCAAACCATTTCATT 122847 ||||| || | | ||||||||||| | || | ||| || | ||| || | Sbjct 1247348 CTGCAAATGCGACCAATCGTTCGGCGAATGTAGAG-TTCTTGTCAGATATCCACTTGAGG 1247406 Query 122848 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTC 122907 ||||||| ||||| || ||||| || | || | |||||| ||||| | | || Sbjct 1247407 GCCCATTCAGCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATCAAAAAGATACTCG 1247466 Query 122908 TTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACC 122967 ||||| | ||||| ||||| |||| || | || || |||||| ||||| Sbjct 1247467 CGTTCAGCTTGGTCCTTGATGTAAGTGTCTATGAGGAGAGAGTACGTTTCGGAATGAATG 1247526 Query 122968 ATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATC 123026 ||| ||| || | |||| | | ||||| |||| ||||| |||||| || | Sbjct 1247527 TTTTCCATCAT-GATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGCCTGAACTTCGT- 1247584 Query 123027 CGCAAAATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGC 123083 | |||| || | || | || || || || |||||||| ||||||| || || Sbjct 1247585 TGGAAAAGCGT--TCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGCAAAAAAGGC 1247642 Query 123084 CAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGG-GT--CTTCCAGTCGTCAAG 123140 || | | | || || | ||||| ||||| ||| || ||||| |||| | Sbjct 1247643 CAAAACATGCGAGATAAAGTGGCGCTCATTGTCATTGAGGCGTTCATTCCAATCGTATAT 1247702 Query 123141 ATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 |||||||| | ||| | || || || ||||| Sbjct 1247703 GTCTTTGGAAAGATCCATCTCCTCGGCCGTCCA 1247735 Score = 96.9 bits (106), Expect = 4e-15 Identities = 288/438 (66%), Gaps = 10/438 (2%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| || ||||| || ||| || |||||||| ||||| ||||| Sbjct 1249473 GCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAGAACGTAAGACCA 1249414 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | ||||||||||| | ||| | ||||| ||| || ||||| ||||| ||||| Sbjct 1249413 GGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCA-AAAGACCCAGAGAAAAAGAT 1249355 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC--- 122834 || || ||| || || |||| || ||||| || || | | |||| | ||| Sbjct 1249354 CCCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAGTG---GACTGTTGATCCGA 1249298 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 122894 | |||| | | ||||| | || || || || ||||| | |||| |||||| || Sbjct 1249297 TATCCATCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTTTCGATGGCGTC 1249238 Query 122895 AAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGT 122954 || | || | ||| | |||||| ||||| | || || | | || || || Sbjct 1249237 GAAAAGATGTGTGCGTTCTTCTGGATCCTTGATGTAGGTATCGATAAGTAAAGAGTACGT 1249178 Query 122955 TTCGCCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTA 123013 ||| ||||| ||| ||| || ||| | ||||||| | || || || || Sbjct 1249177 TTCCGAGTGAACATTTTCCATCAT-AATTTGGAAGCCGTAGAAGCAACGTGCCTCAGCTA 1249119 Query 123014 TCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 123073 |||| | ||| | ||| | | | || ||||||| || || || ||||| ||| Sbjct 1249118 TCTGTATTTCACTAGAAAACCTCTCAAGGAGATTCTCATTCACGATGCCGTCGGAAGCAG 1249059 Query 123074 CAAAGAATGCCAGGATGT 123091 |||| ||||| |||| || Sbjct 1249058 CAAAAAATGCGAGGACGT 1249041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628018246099200