Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 100 3e-16 seq21 98.7 1e-15 >seq3 Length=1746238 Score = 100 bits (110), Expect = 3e-16 Identities = 211/311 (68%), Gaps = 13/311 (4%) Strand=Plus/Plus Query 59829 CACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCT 59888 ||||| || |||||||| | | ||||||| | |||||||||| ||||| | Sbjct 1249169 CACTCGGAAACGTACTCTTTACTTATCGATACCTACATCAAGGATCCAGAAGAACGCACA 1249228 Query 59889 GGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATG 59948 ||| ||| ||||| || || | | ||||| | ||||| || ||||| | Sbjct 1249229 CATCTTTTCGACGCCATCGAAACCATCTCATGTGTTAAGCGTAAAGCTGATTGGGCTCT- 1249287 Query 59949 CAG-TGGATGAGTCCTGGAGCATCA-------TTTGCACAACGTCTCATAGCTTTTGCAT 60000 ||| ||||| || ||| || || ||||| |||| ||| | ||||| || Sbjct 1249288 CAGATGGATA--TC--GGATCAACAGTCCACTTTTGCTGAACGACTCGTTGCTTTCGCCG 1249343 Query 60001 GCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTG 60060 || ||||| ||||| |||||||| || || |||||| |||||| |||| ||||| | Sbjct 1249344 CTGTAGAAGGGATCTTTTTCTCTGGGTCTTTTGCTGCTATCTTCTGGATCAAGAAGCGGG 1249403 Query 60061 GCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATC 60120 | | ||||| || || | |||||||| || || || ||| ||||||||||| || Sbjct 1249404 GATTAATGCCTGGTCTTACGTTCTCCAATGAACTCATCAGCCGCGACGAGGGCCTTCACA 1249463 Query 60121 AGGAGTTTGCA 60131 ||| |||||| Sbjct 1249464 CGGATTTTGCA 1249474 >seq21 Length=1130388 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 79684 GCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGG 79743 || |||| |||||| || || ||||| || ||||| || |||||||||||| ||| ||| Sbjct 174739 GCACACTGCTTGAGGGTATCATAGATACCATCGATTGAATCGTCCTTCATACAGACAAGG 174680 Query 79744 AAGCA-GCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTG 79802 || || | | | | ||||||| | |||||||| |||||||| || |||| || || Sbjct 174679 AAACACGAGCTA-AGTTGTGGGTGGGGTGTACCGGCATTGAAGAGTGTAGGCGAGGCATG 174621 Query 79803 CGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCC 79862 |||||| | | ||| || | |||||||| |||||| | ||| || || Sbjct 174620 TGTGAAGTAGCGCTCAGACATAAGGTTATACGTCTCGAGGACGCGATCAATGTCATCACC 174561 Query 79863 GTGGATGCCGACCGCGACGCGCATGA 79888 || ||||| ||||| || ||||||| Sbjct 174560 ATGAATGCCAACCGCAACACGCATGA 174535 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 78199 TAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTG 78258 || ||||| || |||||||||||||||||||| ||||| | |||||| || | ||||| Sbjct 176434 TAATACATCCCTGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGCTTGTCAGCTGA 176375 Query 78259 GCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCG 78318 | || |||| || || | || || | |||| |||| |||| | ||||| Sbjct 176374 CCAAGCGTCGGCGCCTGCAAGTGGACATTCAAACTCTGGCTCTGGCAGATGAAGGCACCT 176315 Query 78319 CGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATG 78378 || || || || | |||||| ||| ||| || |||||||| | |||| || || Sbjct 176314 CGATCAGCAGCGAGGTCGATAACCTTCTTCTGGCTGATCTCCCAAACGGTCTTATAGATT 176255 Query 78379 GCCTT 78383 ||||| Sbjct 176254 GCCTT 176250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548512787306880