Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 125 8e-24 seq94 86.0 7e-12 >seq3 Length=1746238 Score = 125 bits (138), Expect = 8e-24 Identities = 350/531 (66%), Gaps = 16/531 (3%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||| | || || | ||||| || || | | ||||||||| || ||||||||| Sbjct 1247236 CCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAAGCCAGGCATCAGACCACGCTTC 1247295 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||||||||| | ||||| || |||||||||||||| ||| ||||| Sbjct 1247296 TTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAAGATGCCTTCCACAGCTGCAAAT 1247355 Query 74889 GCGACAAGGCGTTGCGCGAACG----GTGCATCGGAAGTCATCCAAGTCTGAGCCCATTC 74944 ||||| | |||| ||||| | || | | | || ||||| | | |||||||| Sbjct 1247356 GCGACCAATCGTTCGGCGAATGTAGAGTTC-TTGTCAGATATCCACTTGAGGGCCCATTC 1247414 Query 74945 AGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTT--GGAAGAGGCTTGCCTTCTCT 75002 ||| || || |||| |||| || ||||| || | |||| || || ||| Sbjct 1247415 AGCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATCAAAAAGATACTCGCGTTCAGC 1247474 Query 75003 TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCG 75062 | || ||||||| | |||| || | || |||||||| || |||||||| || Sbjct 1247475 TTGG--TCCTTGATGTAAGTGTCTATGAGGAGAGAGTACGTTTCGGAATGAATGTTTTCC 1247532 Query 75063 TTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAA- 75121 | | || | | ||||| | || || || || ||| || || || ||||| Sbjct 1247533 ATCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGCCTGAACTTCGTTGGAAAAG 1247592 Query 75122 -ATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCA 75180 ||| | | | || || |||||||||| || || || || ||||| |||| || Sbjct 1247593 CGTTC--GACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGCAAAAAAGGCCAAAACAT 1247650 Query 75181 TTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCG 75237 ||||||||||||||||| |||| ||| ||| | |||||| | | ||| | Sbjct 1247651 GCGAGATAAAGTGGCGCTCATTGTCATTGAGGCGTTCATTCCAATCGTATATGTCTTTGG 1247710 Query 75238 CCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 | ||| ||||||||| |||||||||| | ||||||||||||| Sbjct 1247711 AAAGATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTGCCTTTTTGTACA 1247761 Score = 118 bits (130), Expect = 1e-21 Identities = 279/419 (67%), Gaps = 13/419 (3%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| || || | ||| || | |||||| || |||| ||| |||||||| | ||| ||||| Sbjct 1249456 GCCCTCGTCGCGGCTGATGAGTTCATTGGAGAACGTAAGACCAGGCATTAATCCCCGCTT 1249397 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||| ||||| ||| || || ||| ||| ||||| ||||| ||| || || Sbjct 1249396 CTTGATCCAGAAGATAGCAGCAAAAGACCCAGAGAAAAAGATCCCTTCTACAGCGGCGAA 1249337 Query 74888 GGCGACAAGGCGTTGCGCGAACG------GTGCATCGGAAGTCATCCAAGTCTGAGCCCA 74941 || || || |||| || || | || ||| || ||||| | ||||||| Sbjct 1249336 AGCAACGAGTCGTTCAGCAAAAGTGGACTGTTGATCCGAT---ATCCATCTGAGAGCCCA 1249280 Query 74942 TTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAG--GCTTGCCTTC 74999 |||||||| || || || | || || ||||| || | ||| || | ||| ||| Sbjct 1249279 ATCAGCTTTACGCTTAACACATGAGATGGTTTCGATGGCGTCGAAAAGATGTGTGCGTTC 1249220 Query 75000 TCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGAC 75059 | || |||||||||| | | || || | | |||||||| ||||| |||| Sbjct 1249219 T--TCTGGATCCTTGATGTAGGTATCGATAAGTAAAGAGTACGTTTCCGAGTGAACATTT 1249162 Query 75060 TCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAA 75119 || | | ||| | ||||||| | || ||||| || ||||||| || | ||| Sbjct 1249161 TCCATCATAATTTGGAAGCCGTAGAAGCAACGTGCCTCAGCTATCTGTATTTCACTAGAA 1249102 Query 75120 AAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 || || || |||||| | ||||||||||| || || || ||||| || || || Sbjct 1249101 AACCTCTCAAGGAGATTCTCATTCACGATGCCGTCGGAAGCAGCAAAAAATGCGAGGAC 1249043 >seq94 Length=248064 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/165 (75%), Gaps = 10/165 (6%) Strand=Plus/Minus Query 124673 AATCTTGCGCGTCACAAAC--TCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATG 124730 |||||||||||| |||||| ||| |||||| || ||||||||| || || || Sbjct 196451 AATCTTGCGCGTAACAAACGTTCG--ACCGCGACGAGGGCTCTCGTGGTTAAAGAGGATC 196394 Query 124731 CCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTC-ATCCAATACCCAAA 124789 ||| | || || ||||||||||||||||||| ||| || || | |||||| | | | Sbjct 196393 CCATTGCAAGCGTACATCCCGTACGACTCGCGATAG-TTGACGACGATCCAAAATGCGTA 196335 Query 124790 GAGCTTGG-ACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGT 124833 |||||||| ||| |||||| || || |||||||| |||||| Sbjct 196334 GAGCTTGGCACA-GCCATATGGAGAGCGAGGGTAGAA--GGGTGT 196293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547204015969600