Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1 125 4e-24 seq2 93.3 3e-14 >seq1 Length=1986796 Score = 125 bits (138), Expect = 4e-24 Identities = 157/211 (74%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 34499 CCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAA 34558 ||| ||| | ||||||||||| || ||||| || || ||||| || | | ||||||||| Sbjct 634020 CCAGATGCAACGTGCTCTCCTTCTGGATGTTGTAGTCAGAAAGCGTCCTCCCGTCTTCAA 634079 Query 34559 GTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGA 34618 | || || || ||||| || | ||||| ||||| ||||| | || |||||||| ||| Sbjct 634080 GCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGCGGAATCCCTTCCTTGTC-CTGA 634138 Query 34619 TCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACGGTTATCGTTT 34675 |||| || ||| | ||| ||||| || | ||||||||||| || ||||| | Sbjct 634139 ATCTTTGCCTTCACGTTGTCAATCGTGTC--CGATGACTCCACTTCCAACGTAATCGTCT 634196 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| | ||| ||||| ||||||||||| Sbjct 634197 TGCCGGTCAGCGTCTTCACGAAAATCTGCAT 634227 Score = 122 bits (134), Expect = 5e-23 Identities = 156/211 (74%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 34498 ACCAA-ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| ||| || ||| ||||| ||||| || || ||||||||||| || ||||||| Sbjct 634818 ACCAAGATGAAGGGTGGATTCCTTCTGAATATTGTAGTCTGAAAGTGTGCGACCGTCTTC 634877 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 |||||| || |||||||| || |||||||||||||| || || | || ||||||||| Sbjct 634878 AAGTTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCGGGGGGGATCCCTTCCTTGTCTTG 634937 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 |||| || | ||| || | ||| || || |||||| |||| ||| || || | Sbjct 634938 GATC-TTGGCTTTGACATTGTCAATGGTATCAGAAGACTCCACCTCCAGGGTAATGGTCT 634996 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || ||||| || ||||| Sbjct 634997 TGCCAGTCAAAGTCTTTACAAAGATTTGCAT 635027 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | ||| || || ||| || || ||||| ||||| || || || || Sbjct 634238 AGACGCAGAACGAGATGCAGCGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTGCGA 634297 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||| ||||| |||||||| || || || |||||||| || || | |||||| Sbjct 634298 CCGTCTTCAAGCTGTTTTCCGGCAAAGATCAAGCGTTGTTGGTCAGGAGGAATGCCCTCC 634357 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || || || ||| ||||| || || || | || Sbjct 634358 TTGTCCTGGAT-TTTCGCCTTGACATTATCAATCGTGTCGGAAGATTCAACCTCGAGCGT 634416 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||| || |||||||| ||||| Sbjct 634417 GATGGTCTTGCCCGTCAGCGTCTTGACAAAAATTTGCAT 634455 >seq2 Length=1435055 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 34497 CACCAA-ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTT 34555 |||||| ||| ||||| ||| || || ||||| |||||||| | |||||| | || | Sbjct 394611 CACCAAGATGCAGAGTCGACTCTTTCTGTATGTTGTAATCTGACAATGTTCGGCCATCCT 394670 Query 34556 CAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615 |||| || || || ||||| || | ||| ||||| || || || | |||||||| || Sbjct 394671 CAAGCTGCTTGCCTGCAAAGATCAGACGTTGTTGATCAGGAGGAATACCCTCCTTATCCT 394730 Query 34616 TGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTT 34674 |||||| | || || || || ||||| | || ||||| | ||| ||||| Sbjct 394731 GAATCTTT-GCCTTGACATTATCGATGGTGTCAGAGGATTCGACTTCGAGGGTGATCGTC 394789 Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || ||||||||||| Sbjct 394790 TTGCCCGTCAAAGTCTTGACGAAAATCTGCAT 394821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722879736216