Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 116 3e-21 seq1 113 3e-20 >seq2 Length=1435055 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | ||||| || |||||||| |||||||| || ||| | Sbjct 394821 ATGCAGATTTTCGTCAAGACTTTGACGGGCAAGACGATCACCCTCGAAGTCGAATCCTCT 394762 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | || || || || ||| | || || ||||| Sbjct 394761 GACACCATCGATAATGTCAAGGCAAAGA-TTCAGGATAAGGAGGGTATTCCTCCTGATCA 394703 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||| || || || || | || || || |||||||| Sbjct 394702 ACAACGTCTGATCTTTGCAGGCAAGCAGCTTGAGGATGGCCGAACATTGTCAGATTACAA 394643 Query 23790 CATACAAAAAGAGTCCAC 23807 |||||| |||||||| || Sbjct 394642 CATACAGAAAGAGTCGAC 394625 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || || || ||||||||||| || || || | Sbjct 395049 ATGCAGATTTTCGTCAAGACTCTTACTGGCAAGACTATCACTCTCGAGGTCGAGTCATCA 394990 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | || || || || || | || || || || Sbjct 394989 GATACCATTGACAATGTCAAGGCGAAGA-TTCAGGATAAGGAGGGCATCCCTCCTGACCA 394931 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || || || ||||||||||| || || | |||||| | ||| ||||| Sbjct 394930 ACAACGTCTTATCTTCGCTGGCAAACAACTCGAGGATGGCCGCACTCTCTCCGACTACAA 394871 Query 23790 CATACAAAAAGAGTCCACA 23808 || || || || || ||| Sbjct 394870 TATTCAGAAGGAATCTACA 394852 >seq1 Length=1986796 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || || ||||| || || ||||| ||||| ||||| || | Sbjct 634455 ATGCAAATTTTTGTCAAGACGCTGACGGGCAAGACCATCACGCTCGAGGTTGAATCTTCC 634396 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||| | ||||| || || | || || || || Sbjct 634395 GACACGATTGATAATGTCAAGGCGAAAA-TCCAGGACAAGGAGGGCATTCCTCCTGACCA 634337 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || || || |||||||| ||||| || ||||||| |||||| | |||||||| Sbjct 634336 ACAACGCTTGATCTTTGCCGGAAAACAGCTTGAAGACGGTCGCACTCTGTCTGATTACAA 634277 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || |||||||| || | ||| | ||| Sbjct 634276 CATCCAGAAAGAGTCGACGCTGCATCTCGTT 634246 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || || ||||| || | ||||| || || || Sbjct 634227 ATGCAGATTTTCGTGAAGACGCTGACCGGCAAGACGATTACGTTGGAAGTGGAGTCATCG 634168 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||| ||| ||||| ||||| | ||||| || || Sbjct 634167 GACACGATTGACAACGTGAAGGCAAAGATTCAGGACAAGGAAGGGATTCCGCCTGACCAG 634108 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| ||||| || || ||||||| | || | || |||||| Sbjct 634107 CAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAAGACGGGAGGACGCTTTCTGACTACAAC 634048 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || ||| ||| || ||| Sbjct 634047 ATCCAGAAGGAGAGCACGTTGCAT 634024 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || || || || || || || || || || | Sbjct 635028 AATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACCCTGGAGGTGGAGTCTTC 634969 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | ||| | || | | ||||| ||||| | || || || | Sbjct 634968 TGATACCATTGACAATGTCAAAGCCAAGA-TCCAAGACAAGGAAGGGATCCCCCCCGACC 634910 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||||| || ||||||||||| ||||| ||||||| ||||| | || |||| Sbjct 634909 AACAGCGTTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACACTTTCAGACTACA 634850 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || || || ||||| Sbjct 634849 ATATTCAGAAGGAATCCAC 634831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338002382650016