Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3 181 9e-41 >seq3 Length=1746238 Score = 181 bits (200), Expect = 9e-41 Identities = 365/537 (68%), Gaps = 11/537 (2%) Strand=Plus/Plus Query 4563 TGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCT 4622 |||| ||| || || | || || || || || || || ||||| || ||||| | ||| Sbjct 1247230 TGCATACCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAAGCCAGGCATCAGACCA 1247289 Query 4623 CTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCG 4682 | ||| || |||||||| || | ||||| || || |||||||| |||||||| || || Sbjct 1247290 CGCTTCTTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAAGATGCCTTCCACAGCT 1247349 Query 4683 GCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCC 4742 ||||| || || ||||| |||| | | ||||| ||||| || | ||| Sbjct 1247350 GCAAATGCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGATATCCACTTGAGGGCC 1247409 Query 4743 CAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTT- 4801 || | ||| || ||| | || || || || | || || | ||| || |||| Sbjct 1247410 CATTCAGCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATCAAA-AAGATACTCGCG 1247468 Query 4802 TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATT 4861 |||| | |||| | || ||||||||||| || || ||| |||| ||||| || || Sbjct 1247469 TTCAGCTTGGTCCTTGATGTAAGTGTCTATGAGGAGAGAGTACGTTTCGGAATGAATGTT 1247528 Query 4862 TTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACA 4921 ||| || || ||||| || || ||||| | |||||| | | ||||||||||| | Sbjct 1247529 TTCCATCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGCCTGAACTTCGTTGGA 1247588 Query 4922 AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAAC 4981 ||| | ||| || | ||||||||| || || || || || |||||||| |||||||| Sbjct 1247589 AAAGCGTTCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGCAAAAAAGGCCAAAAC 1247648 Query 4982 ATGAGATATAAAGT---ACTGTTCGTCAGGCTTAA---GTTTTTTCCAGTGGGGCAAATC 5035 ||| || ||||||| || | |||| || | ||| ||||| | | | || Sbjct 1247649 ATGCGAGATAAAGTGGCGCTCATTGTCA---TTGAGGCGTTCATTCCAATCGTATATGTC 1247705 Query 5036 TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 ||| | | ||| | || || | ||||| || || ||||| || ||||||||||| Sbjct 1247706 TTTGGAAAGATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTGCCTTTTTGTACAT 1247762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427040481423416