Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 223 5e-53 >seq3 Length=1746238 Score = 223 bits (246), Expect = 5e-53 Identities = 394/568 (69%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| | |||||||||||| ||||| || || || | || || | ||| || || Sbjct 1249485 AACAACAGACATGCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAG 1249426 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || ||||| ||||||| ||| || || |||| ||| || || || || ||||| ||| Sbjct 1249425 AACGTAAGACCAGGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCA 1249366 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG-CT-T 48309 || || || || |||||||| || || || || |||| || | || ||| || | Sbjct 1249365 GAGAAAAAGATCCCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAGTGGACTGT 1249306 Query 48310 CGTTGTG-TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT 48368 | | | |||||| | | ||||||||||| || ||| ||||| | || ||||| Sbjct 1249305 TGATCCGATATCCATCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTTTCG 1249246 Query 48369 ATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAA 48426 || || | || ||| | ||| | ||| || | ||| ||||| || | ||| Sbjct 1249245 ATGGCGTCGAAAAGATGTGTGCGTTCTTCTGGATCCTTGATGTAGGTATCGATAAGTAAA 1249186 Query 48427 GACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCG 48486 || ||| |||| ||||||| |||||| || || || || ||||| || || | | Sbjct 1249185 GA--GTACGTTTCCGAGTGAACATTTTCCATCATAATTTGGAAGCCGTAGAAGCAACGTG 1249128 Query 48487 CTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCAT 48546 | || | ||||||| || || |||| | ||| | ||||||||| || || || | Sbjct 1249127 CCTCAGCTATCTGTATTTCACTAGAAAACCTCTCAAGGAGATTCTCATTCACGATGCCGT 1249068 Query 48547 CACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTT 48606 | ||||||||||||||| | || || ||| |||||| ||||||||| | |||| Sbjct 1249067 CGGAAGCAGCAAAAAATGCGAGGACGTGGGAAATGAAATATCGTTCGTTGGAGTTAAGTT 1249008 Query 48607 TA---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATG 48663 || ||||| || ||| ||| | | | ||||| |||||| |||||||||||||||| Sbjct 1249007 TATAGTTCCAATCCATGAGATCATGACAGAGATCTATTTCTTCGGCTGTCCAAAATGATG 1248948 Query 48664 CCTCTGCTTTTTTATACATATTCCATAT 48691 ||| ||| | |||||| | ||||||||| Sbjct 1248947 CCTGTGCCTGTTTATAAAAATTCCATAT 1248920 Score = 183 bits (202), Expect = 4e-41 Identities = 366/539 (68%), Gaps = 10/539 (2%) Strand=Plus/Plus Query 48161 ACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTT 48220 ||| ||||| | ||| || | || || || || || | || ||||| || ||||| || Sbjct 1247235 ACCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAAGCCAGGCATCAGACCACGCTT 1247294 Query 48221 TTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAA 48280 ||||||||||| |||| || || || || |||||||| |||||||| || || ||||| Sbjct 1247295 CTTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAAGATGCCTTCCACAGCTGCAAA 1247354 Query 48281 TGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCCACCGTTGTGCCCAATC 48337 |||| | || || || | | | | |||| ||||||| | ||||| || Sbjct 1247355 TGCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGATATCCACTTGAGGGCCCATTC 1247414 Query 48338 AGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCA-- 48395 |||||| ||| | ||| || || || || || |||| ||| ||| | | |||| Sbjct 1247415 AGCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATCAAAAAGATACTCGCGTTCAGC 1247474 Query 48396 TTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCA 48455 ||| || || | |||||| ||||| | ||| ||| ||||||| ||||| ||||| Sbjct 1247475 TTG--GTCCTTGATGTAAGTGTCTATGAGGAGAGAGTACGTTTCGGAATGAATGTTTTCC 1247532 Query 48456 ATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAAT 48515 || || ||||| || || || || | ||||| | | ||| || || | |||| Sbjct 1247533 ATCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGCCTGAACTTCGTTGGAAAAG 1247592 Query 48516 CGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGT 48575 ||||| | | || || || || || ||||| |||||||||||| || || ||||| Sbjct 1247593 CGTTCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGCAAAAAAGGCCAAAACATGC 1247652 Query 48576 TTAATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTTTGAT 48632 ||||| | || ||| | | | ||| |||||| || | || ||||| || Sbjct 1247653 GAGATAAAGTGGCGCTCATTGTCATTGAGGCGTTCATTCCAATCGTATATGTCTTTGGAA 1247712 Query 48633 ATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | ||| | || || || ||||| || ||||| ||||| ||||| ||||| | |||||| Sbjct 1247713 AGATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTGCCTTTTTGTACATCTGCCATAT 1247771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694653586753280