Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 244 2e-59 >seq3 Length=1746238 Score = 244 bits (270), Expect = 2e-59 Identities = 398/568 (70%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 |||| | |||||||||||| |||||||| || || | || || | ||| || || Sbjct 1249485 AACAACAGACATGCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAG 1249426 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || || || |||||||||| ||| ||||| |||| ||| || ||||| || ||||| ||| Sbjct 1249425 AACGTAAGACCAGGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCA 1249366 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 || || || || ||||||||||| ||||| || || |||| || | || ||| | Sbjct 1249365 GAGAAAAAGATCCCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAGTGGACTGT 1249306 Query 46801 TTAT--GA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 | || || ||||| || ||||||||||||| || ||| ||||| | || ||||| Sbjct 1249305 TGATCCGATATCCATCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTTTCG 1249246 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAA 46915 || || | || ||| | ||| || ||| || | || ||||| || | ||| Sbjct 1249245 ATGGCGTCGAAAAGATGTGTGCGTTCTTCTGGATCCTTGATGTAGGTATCGATAAGTAAA 1249186 Query 46916 GACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTG 46975 || ||| |||| || |||| ||||| || || || || ||||| || || | || Sbjct 1249185 GA--GTACGTTTCCGAGTGAACATTTTCCATCATAATTTGGAAGCCGTAGAAGCAACGTG 1249128 Query 46976 CTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCAT 47035 | |||| ||||||| || || |||| | ||| | |||||||||||| || || | Sbjct 1249127 CCTCAGCTATCTGTATTTCACTAGAAAACCTCTCAAGGAGATTCTCATTCACGATGCCGT 1249068 Query 47036 CACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTT 47095 | ||||||||||||||| | || || ||| |||||| ||| | || | |||| Sbjct 1249067 CGGAAGCAGCAAAAAATGCGAGGACGTGGGAAATGAAATATCGTTCGTTGGAGTTAAGTT 1249008 Query 47096 TA---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACG 47152 || ||||| || ||| ||| | | | ||||| |||||| |||||||| ||||| | Sbjct 1249007 TATAGTTCCAATCCATGAGATCATGACAGAGATCTATTTCTTCGGCTGTCCAAAATGATG 1248948 Query 47153 CCTCTGCTTTTTTATACATATTCCATAT 47180 ||| ||| | |||||| | ||||||||| Sbjct 1248947 CCTGTGCCTGTTTATAAAAATTCCATAT 1248920 Score = 203 bits (224), Expect = 5e-47 Identities = 375/545 (69%), Gaps = 9/545 (2%) Strand=Plus/Plus Query 46651 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTT 46710 || ||||| | ||| || | || || || || || | |||||||| || |||||||| Sbjct 1247236 CCCTCATCACGACTGATAAGCTCATTTGAGAAGGTTAAGCCAGGCATCAGACCACGCTTC 1247295 Query 46711 TTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAAT 46770 ||||||||||| || | || || || || |||||||| |||||||| ||||| || ||| Sbjct 1247296 TTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAGAAGATGCCTTCCACAGCTGCAAAT 1247355 Query 46771 GCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCA 46827 ||||| | || || || | | | | || | | |||||| | | ||||| ||| Sbjct 1247356 GCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCAGATATCCACTTGAGGGCCCATTCA 1247415 Query 46828 GCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCA 46887 ||||| ||| | ||| || || || || || |||| ||| ||| | | |||| | Sbjct 1247416 GCCTTACGCTTGATACAGGGGATGGTCTCGATGGCATCAAAAAGATACTCGCGTTCAGCT 1247475 Query 46888 CTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATA 46947 || || | || || ||||| | ||| ||| |||| |||||||||||||| || Sbjct 1247476 TGGTCCTTGATGTAAGTGTCTATGAGGAGAGAGTACGTTTCGGAATGAATGTTTTCCATC 1247535 Query 46948 GCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGT 47007 || ||||| || || || || | ||||||| ||| || || | |||| ||| Sbjct 1247536 ATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCGGCCTGAACTTCGTTGGAAAAGCGT 1247595 Query 47008 TCAGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTT 47066 || ||||| || || || || || ||||| |||||||||||| ||||| ||||| Sbjct 1247596 TC-GACAAGGTTTTCGTTGACGATGCCATCGGAAGCAGCAAAAAAGGCCAAAACATGCGA 1247654 Query 47067 AATAAAATATTTTTCATCGGTAGTCA---GTTTATTCCAGTCATTGATATCTTTTGATAT 47123 ||||| | |||| | | | | ||| |||||| || | || ||||| || | Sbjct 1247655 GATAAAGTGGCGCTCATTGTCATTGAGGCGTTCATTCCAATCGTATATGTCTTTGGAAAG 1247714 Query 47124 ATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATAT- 47182 ||| | || || || |||||||| || || ||||| ||||| ||||| | |||||| | Sbjct 1247715 ATCCATCTCCTCGGCCGTCCAGAAGGATGCTTCTGCCTTTTTGTACATCTGCCATATCTA 1247774 Query 47183 CACGA 47187 ||||| Sbjct 1247775 CACGA 1247779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712918786736640