Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2181 165 8e-36 >seq2181 Length=22295 Score = 165 bits (182), Expect = 8e-36 Identities = 466/704 (66%), Gaps = 24/704 (3%) Strand=Plus/Plus Query 16700 AAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGCT 16759 ||||||||||| || || | ||||| || ||||||||||| || || ||||| || || Sbjct 13165 AAAAAGTTAGTCTTTCCTTGCAGAGAGATGTTCTCCATGAAGTCGAAGGGATTTGTCGC- 13223 Query 16760 GAAAATATT--TTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATAT 16817 | || | || || || || || | | | || || || ||||| || || | Sbjct 13224 -ATTGTAGTGCTTCTCGTTGCCGAGGGCGACCAGCAGTCGGTCGGCGACAAACTCGATGT 13282 Query 16818 ATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACC-GGAAGAGCTTCCGTCAAA 16876 |||||| ||| | | |||||| || || | | | || || || || || || | Sbjct 13283 ATTGGCTCATCAGACGGGCGTTCATGCCGATCA-ATGAACATGGCAGCGCATCAGTGAGG 13341 Query 16877 AATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGT 16936 || |||||| || || ||||| ||| || | |||| || |||| | ||| Sbjct 13342 AAGGCTTGCTCGATGGTGACAGCTTCGCCAATGATGC--GCAAGACGA-CCTCAG--GGT 13396 Query 16937 GTATGT-----TTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGT 16991 || | || ||||| | || | || || || || ||| || | ||||||| Sbjct 13397 GTGGGCGCTTCTTGAGATGACTGAAGAGTAGGCACGCAAAGTCGGTGTGCAGACCCTCGT 13456 Query 16992 CTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACC 17051 ||| |||||| || ||||| || || || | |||||||| || || ||||| | || Sbjct 13457 CTCGGCTGATGAGCTCGTTGGAGAACGTGAGGCCGGGCATGAGACCGCGCTTCTTGAGCC 13516 Query 17052 AAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTA 17111 | || || | ||| || |||||||| ||||| || ||||| |||| || || ||||| | Sbjct 13517 AGAAGATGGAGGCAAAGGACCCAGAGAAGAAGATGCCCTCCACGGCGGCGAAGGCGATCA 13576 Query 17112 ATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCA---CCCACTCGGCTT 17168 |||| || || | |||| || ||| ||||| | ||| |||||||||| | Sbjct 13577 ATCGCTCAGCAAAGGTCGATTCGGTGTCGTTGATCCA---CCGCATGGCCCACTCGGCCT 13633 Query 17169 TTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGT 17228 ||||||| | | | || || || ||||| | ||| | | || || ||| ||| Sbjct 13634 TTTGCTTGACGACAGGGATGGTCTCCATGGCATCAAAGAGGTAGTCGCGTTGCTGAGGGT 13693 Query 17229 CGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTA 17288 || || || || |||||||| || ||| | || ||||| ||||||||||| | Sbjct 13694 CGCGAATGTATGTGTCGATGAGCAGAGAGTATGTCTCCGAGTGAATGTTCTCCATCATGA 13753 Query 17289 TCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC-ACGTAGAATCGTTCC 17347 |||| || ||||| |||||||| || || ||| ||| || ||| | || || || || Sbjct 13754 TCTGGAAGCCGTAGAAGCATCGAGCCTCTGCTGCTTGCACCTCCGAACTA-AACCGCTCG 13812 Query 17348 GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 | || || ||||| || || ||||| || ||||| || || Sbjct 13813 ACGAGGTTCTCGTTGACAATACCGTCTGATGCTGCGAAGAAGGC 13856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517526916603840