Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2399 156 5e-33 seq2181 152 6e-32 >seq2399 Length=11591 Score = 156 bits (172), Expect = 5e-33 Identities = 425/648 (66%), Gaps = 2/648 (0%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 || || || ||| | || ||||| | |||||||||||||| | | ||||| ||||| Sbjct 3830 CCGGGGCACTCAGCGGGGCACATGAGCGACCACTCTCCGTTCTGTTCGACTCGCTTCATG 3771 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || | || ||||||||||| || || || || | || | | ||||| || || Sbjct 3770 AACAAGTCGGGAATCCAAAGGGCGTAGAAGAGCTCACGGGCGCGAACCTCCTCCTTGCCG 3711 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| | || ||||||||| | | | || || ||||| || || | ||| ||| Sbjct 3710 TGGTTCTTCCTGAGGTCGAGGAACTCGAAGACGTCCGAGTGCCAAGGCTCAATGTAGATG 3651 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | || || || ||||| || ||||| || | ||| | ||||||||| || | Sbjct 3650 GCAAAAGCCCCCGGTCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAG 3591 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 |||| | ||| |||| ||| || ||||| | || ||||| || | || || || Sbjct 3590 ACTCGAAGCATGGGAACAATGCCGTTGGAGACGCCGTTGGTTCCAGCAATGTAAGAGCCG 3531 Query 54281 CTGGCACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 || | || || | | | || | || || || || || ||| | || ||| | || Sbjct 3530 GTGCCTCGGAT-GCAGTGAATGTTGAGCCCGATGCCACCGGCCGTCTTGCTGATCATGGC 3472 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 ||| || | || || |||||||| || || |||||| |||| | | || || Sbjct 3471 GCAAGTCTTGAGGGTGTCGTAGATGCCGTCGATGGAGTCATCCTTCATCGTGACCAGGAA 3412 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 ||| ||||| ||| || ||||| ||||| || | ||| || || ||||| || Sbjct 3411 GCAGGATGACATCTGGGGATTGGGTGTTCCGGCATTGAAGAGGGTGGGCGAGGCGTGGGT 3352 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATG 54519 || | || || || | || ||||| || ||||| || ||| || |||| || Sbjct 3351 GAAGTACTTCTCCGACATGAGGTTGTAAGTGTCGATGGCCTGGTCAATGTCCCGCCCGTG 3292 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 ||| || || ||||| ||||| | ||| || || || || || ||| |||| ||| || Sbjct 3291 AATGCCGACGGCGACTCGCATGAGCATATGTTGCGGCCTCTCGGCGACCTTGCCGTTGAT 3232 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||||| || || || | ||| || || || || ||||| || Sbjct 3231 GCGCAGCAGATAAGAGCGCTCGAGAGTCTTGAAGCCGAAGTAGTTCTA 3184 >seq2181 Length=22295 Score = 152 bits (168), Expect = 6e-32 Identities = 372/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| ||||||||||||| || || | |||||||| |||||||| Sbjct 13429 CACGCAAAGTCGGTGTGCAGACCCTCGTCTCGGCTGATGAGCTCGTTGGAGAACGTGAGG 13488 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| || || ||||| || ||||| || ||||| ||||| || ||||| ||||| Sbjct 13489 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGACCCAGAGAAGAAG 13548 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA-ACCG--GCGCTGTCATGT 24311 || || || || || || ||||| || | || || || | || || |||| | Sbjct 13549 ATGCCCTCCACGGCGGCGAAGGCGATCAATCGCTCAGCAAAGGTCGATTCGGTGTCGTTG 13608 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||||| ||||| |||||||| | || || ||| || ||||| || |||| | Sbjct 13609 ATCCACCGCATGGCCCACTCGGCCTTTTGCTTGACGACAGGGATGGTCTCCATGGCATCA 13668 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 ||||| |||| || | | || || ||||| || || | ||| || | Sbjct 13669 AAGAGGTAGTCGCGTTGCTGAGGGTCGCGAATGTATGTGTCGATGAGCAGAGAGTATGTC 13728 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 ||||| |||||||| || || || || || |||||||| |||| |||||| | Sbjct 13729 TCCGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCTGCTGCT 13788 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || || || || ||| || || | | || || || || || ||||| ||||| Sbjct 13789 TGCACCTCCGAACTAAACCGCTCGACGAGGTTCTCGTTGACAATACCGTCTGATGCTGCG 13848 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGT--TTATTCCA 24607 || || || | || || | ||||| | || | || ||| | | || | ||| Sbjct 13849 AAGAAGGCGAGGACGTGGCTGATAAAGTGACGCTCAT-TGTCGTTCAACTTGTTGTCCCA 13907 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 || | || || || || | || | || || | ||||| || |||||||||||||| Sbjct 13908 GTCGTGCATGTCCTTGGAAAGGTCGATCTCCTCAGCAGTCCAGAACGATGCCTCTGCCTT 13967 Query 24668 TTTATACATATTCCAGAT 24685 || ||||| | |||||| Sbjct 13968 CTTGTACATTTGCCAGAT 13985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593700166650240