Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2746 104 3e-17 seq2204 82.4 9e-11 >seq2746 Length=6115 Score = 104 bits (114), Expect = 3e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 145680 CTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTC 145739 ||||| |||||| || |||| | |||| ||||||||||| |||| | | || || Sbjct 2359 CTTCAAGGGCTCGACATGGTCGCGGTACACGTGCGCGTCGCCCATGCTCAACACGAGCTC 2300 Query 145740 CCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTAT 145799 |||| |||| | |||||| || || ||||||| |||| || | |||||||| || Sbjct 2299 GCCGGCCTCGCAGTCCGTGACCTGTGCCACCATGTGCGTCAAGAGAGCATAGCTGGCAAT 2240 Query 145800 GTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851 |||||| || || || || |||| || | ||||| ||||||| ||||||| Sbjct 2239 GTTGAAAGGAACGCCGAGTCCCAAATCGCAGGAGCGTTGGTACATCTGGCAG 2188 >seq2204 Length=20916 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 145680 CTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTC 145739 ||||| |||||| || |||| | |||| ||||||||||| |||| | | || || Sbjct 20769 CTTCAAGGGCTCGACATGGTCGCGGTACACGTGCGCGTCGCCCATGCTCAACACGAGCTC 20828 Query 145740 CCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTAT 145799 |||| |||| | |||||| || || ||||||| |||| || | |||||||| || Sbjct 20829 GCCGGCCTCGCAGTCCGTGACCTGTGCCACCATGTGCGTCAAGAGAGCATAGCTGGCAAT 20888 Query 145800 GTTGAAGGGCACCCCCAGCCCCA 145822 |||||| || || || || |||| Sbjct 20889 GTTGAAAGGAACGCCGAGTCCCA 20911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590055498227520