Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2181 421 7e-113 seq2456 152 5e-32 seq2114 145 8e-30 seq580 143 3e-29 seq2269 129 6e-25 >seq2181 Length=22295 Score = 421 bits (466), Expect = 7e-113 Identities = 582/803 (72%), Gaps = 15/803 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| ||||||||||| | |||||| | ||||| Sbjct 13985 ATCTGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACTGCTGAGGAGATCGACCTT 13926 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||||| | ||||||||| | ||||||||||| ||||| || || |||| Sbjct 13925 TCCAAGGACATGCACGACTGGGACAACAAGTTGAACGACAATGAGCGTCACTTTATCAGC 13866 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811 ||||| || ||||| ||||| || ||||| || ||||||||||| || |||||||| Sbjct 13865 CACGTCCTCGCCTTCTTCGCAGCATCAGACGGTATTGTCAACGAGAACCTCGTCGAGCGG 13806 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | || ||||||||| | || ||||| || |||||||||||||| |||||| || Sbjct 13805 TTTAGTTC-GGAGGTGCAAGCAGCAGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 13747 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCT--CTTCG 116929 ||||||| | |||||||| | || || ||||||||||| ||| | ||| | || Sbjct 13746 GGAGAACATTCACTCGGAGACATACTCTCTGCTCATCGACACATACATTCGCGACCCTCA 13687 Query 116930 G--AGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | | || || | | | |||| ||||| ||||| || || |||||| | |||| Sbjct 13686 GCAACGCGA--CTACCTCT-TTGAT-GCCATGGAGACCATCCCTGTCGTCAAGCAAAAGG 13631 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||||||||| |||| |||||| || || || | |||| | ||||| || | | Sbjct 13630 CCGAGTGGGCCATGCGGTGGATCAACGACACCGAATCGACCTTTGCTGAGCGATTGATCG 13571 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 ||||||| ||||| |||||| ||||||| || || || ||| |||| || ||||||| Sbjct 13570 CCTTCGCCGCCGTGGAGGGCATCTTCTTCTCTGGGTCCTTTGCCTCCATCTTCTGGCTCA 13511 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| ||||| |||||||||||||| || ||| ||||||||||||| | | ||||||| Sbjct 13510 AGAAGCGCGGTCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCAGCCGAGACGAGG 13451 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 ||||||| ||||||||| || | || |||| ||| | | |||| || | | | Sbjct 13450 GTCTGCACACCGACTTTGCGTGCCTACTCTTCAGTCATCTCAAGAAGCGCCCACACCCTG 13391 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | |||| | ||| | ||| || ||| |||||||||| ||||||||| || | Sbjct 13390 AGGTCGTCTTGCGCATCATTGGCGAAGCTGTCACCATCGAGCAAGCCTTCCTCACTGATG 13331 Query 117288 CGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 ||||||| || | | || | || | || | |||| |||||||||||||| Sbjct 13330 CGCTGCCATGTTCAT-TGATCGGCATGAACGCCCGTCTGATGAGCCAATACATCGAGTTT 13272 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||||||| | |||||| ||| || | | || ||||||||||| || | || || Sbjct 13271 GTCGCCGACCGACTGCTGGTCGCCCTCGGCAACGAGAAGCACTACAATGCGACAAATCCC 13212 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | |||||| Sbjct 13211 TTCGACTTCATGGAGAACATCTC 13189 >seq2456 Length=10261 Score = 152 bits (168), Expect = 5e-32 Identities = 163/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| ||||| || |||||| |||| || || || Sbjct 1323 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACCCTCGAGGTGGAGTCC 1264 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| ||||| |||||| |||| Sbjct 1263 TCCGACACCATCGACAACG-TCAAGACCAAGATCCAGGACAAGGAGGGGATCCCCCCGGA 1205 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || ||||||| || || |||||||| || |||| || || || | |||||| Sbjct 1204 CCAGCAGCGGCTCATCTTTGCCGGAAAACAGCTCGAGGACGGACGGACGCTGAGCGACTA 1145 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| ||| || ||||| || Sbjct 1144 CAACATCCAGAAGGAGAGCACCCTTCATCTGGT 1112 >seq2114 Length=91084 Score = 145 bits (160), Expect = 8e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| ||||||||| |||| ||||| | | Sbjct 22924 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCA 22983 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| ||| || | ||||| |||||||| || ||||||| Sbjct 22984 GACACCATTGACAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAA 23043 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || ||||| || |||| ||||| ||| |||||||||| Sbjct 23044 CAACGTCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAAC 23103 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || || || Sbjct 23104 ATCCAGAAGGAGTCGACACTCCA 23126 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| |||| |||||| | | Sbjct 18649 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAAGTCGAATCTTCA 18590 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | |||||||||||||| ||| ||||||| Sbjct 18589 GACACCATTGACAATGTCAAGACCAAGATCCAGGACAAAGAGGGCATTCCCCCGGACCAA 18530 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| ||||| || |||| || || || ||||||||| Sbjct 18529 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGTACTCTTTCGGACTACAAC 18470 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | ||||| || Sbjct 18469 ATCCAGAAGGAGTCTACGCTCCA 18447 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| || ||| | | Sbjct 18421 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCATCG 18362 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || || | ||||| |||||||| ||| ||||||| Sbjct 18361 GACACAATCGACAACG-TAAAGACGAAGATCCAAGACAAGGAGGGCATTCCCCCGGACCA 18303 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| ||||| || || || |||| ||||||||| |||||||| Sbjct 18302 ACAGCGCCTCATCTTCGCAGGCAAGCAACTTGAGGACGGCCGCACCCTCTCTGACTACAA 18243 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| |||| || || Sbjct 18242 CATTCAGAAGGAGTCCACACTCCA 18219 Score = 122 bits (134), Expect = 9e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40701 CGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA 40760 ||| || || || || ||||| ||||| ||| |||| ||||| || | |||| | | | Sbjct 18866 CGTTAAGACTCTTACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCAGACACCATCGA 18807 Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 | ||||| || || | ||||| |||||||| || ||||||| ||||| || || Sbjct 18806 CAATGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAACAACGTCTGAT 18747 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || ||||| ||||| || |||| ||||| ||| ||||||||||||||| ||||| Sbjct 18746 CTTTGCCGGCAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACAACATCCAAAAGGA 18687 Query 40881 GGCCACGCTGCA 40892 | |||| || || Sbjct 18686 GTCCACTCTCCA 18675 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| ||||||||| |||| || ||| | | Sbjct 23152 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCA 23211 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| ||| || | ||||| |||||||| ||| ||||||| Sbjct 23212 GACACCATCGACAATGTCAAGACAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 23271 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || ||||| ||||| || |||| || || || ||||||||| Sbjct 23272 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAAGACGGCCGTACTCTTTCGGACTACAAC 23331 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| |||||| | || || || Sbjct 23332 ATCCAAAAGGAGTCGACACTCCA 23354 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 40701 CGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA 40760 ||| || || || || ||||| ||||||||| |||| ||||| || | || | | | | Sbjct 22707 CGTTAAGACTCTTACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCAGATACCATCGA 22766 Query 40761 -AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 |||| ||||| || || | ||||| ||||| ||||| ||||||| || || |||| Sbjct 22767 CAACG-TCAAGACCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAACAGCGTCTCA 22825 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| ||| || || ||||| || || | |||||||| ||||||||||||||| |||| Sbjct 22826 TCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAAAAGG 22885 Query 40880 AGGCCACGCTGCA 40892 || | || || || Sbjct 22886 AGTCGACCCTCCA 22898 >seq580 Length=47424 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || |||||| |||| || || | || Sbjct 27535 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCC 27594 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| ||||| |||||| ||||||| Sbjct 27595 GACACGATCGACAACG-TCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCA 27653 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || |||| ||||| || |||||||| Sbjct 27654 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAA 27713 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || || || || ||| | ||| || | || || Sbjct 27714 CATCCAGAAGGAGTCGACCCTCCACCTCGTGCTTCGCCTGCGTGGTGG 27761 >seq2269 Length=80277 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| || |||||| |||| || || | || Sbjct 52418 ATGCAGATCTTTGTGAAGACTCTCACAGGCAAGACGATCACCCTCGAGGTGGAGTCATCC 52477 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| || || | ||||| ||||||||||| ||||||| Sbjct 52478 GACACGATTGACAACG-TCAAGACCAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCA 52536 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| || ||||| ||||| || |||| || || || |||||||| Sbjct 52537 ACAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGACGGCCGAACGCTGTCGGACTACAA 52596 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || ||||| || || |||| || | ||||| Sbjct 52597 CATCCAGAAGGAATCGACCCTGCACCTCGTCCTGCGTCTGCGCGGCGG 52644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515200600586880