Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2114 136 3e-27 seq2456 129 5e-25 seq580 118 9e-22 seq2269 107 2e-18 >seq2114 Length=91084 Score = 136 bits (150), Expect = 3e-27 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||| ||||| || || |||||||| ||| | ||||| ||||| Sbjct 23132 ACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCA 23073 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGT 118648 ||||| ||||| ||| |||||||||| || || || || || |||||||||||||| || Sbjct 23072 AGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGG 23013 Query 118649 AATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 | | ||||| || || | || | |||||| | ||||||||||| ||| | || | Sbjct 23012 A--TCTTTGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGATGGTCT 22955 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||| || || || || |||||||| Sbjct 22954 TGCCGGTCAGCGTCTTGACGAAGATCTGCAT 22924 Score = 132 bits (146), Expect = 4e-26 Identities = 151/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| ||||| |||||||| ||| | ||||| |||||| Sbjct 22904 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCA 22845 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGT 118648 ||||| ||||| ||| ||||||||||||| || || ||||| || ||||||||||| || Sbjct 22844 AGCTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGG 22785 Query 118649 AATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 | | || || || || | |||| ||| || | | ||||||||||| ||| | || | Sbjct 22784 A--TCTTGGTCTTGACGTTGTCGATGGTATCTGAGGACTCGACCTCGAGGGTGATGGTCT 22727 Query 118708 TGCCGGTCAGAGTTTTTAC 118726 ||||||| ||||| || || Sbjct 22726 TGCCGGTAAGAGTCTTAAC 22708 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| ||| ||||| || ||||||||||| || | ||||| ||||| Sbjct 18212 CACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTC 18271 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || || || || ||| ||||||| ||||| || || || || ||||||||||||||| Sbjct 18272 AAGTTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCTTG 18331 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | |||| ||||||| || | || ||||||| ||| | || | Sbjct 18332 GATCTTCGTCTTTACGTTGTCGATTGTGTCCGATGAT-TCAACCTCGAGGGTGATGGTCT 18390 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||| || || || || |||||||| Sbjct 18391 TGCCGGTCAGGGTCTTGACGAAGATCTGCAT 18421 Score = 114 bits (126), Expect = 1e-20 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| ||||| |||||||| ||| | ||||| ||||| Sbjct 18669 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCA 18728 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGT 118648 ||||| || || || |||| ||||| || || || ||||| ||||||||||||| ||| Sbjct 18729 AGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 18788 Query 118649 AATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 | | || || || || | |||| |||||| | | ||||||||||| ||| | || | Sbjct 18789 A--TCTTGGTCTTGACATTGTCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATGGTCT 18846 Query 118708 TGCCGGTCAGAGTTTTTAC 118726 |||| || ||||| || || Sbjct 18847 TGCCAGTAAGAGTCTTAAC 18865 Score = 111 bits (122), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || |||||||||| ||| ||||| ||||| |||||||| || Sbjct 23378 CCACCGCGGAGACGCAGGACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGAA 23319 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || || || ||||| || || || |||| | ||||| || || || || Sbjct 23318 AGAGTACGGCCGTCTTCAAGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGGGGA 23259 Query 118632 ATGCCCTCCTTGTC-TGTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 |||||||||||||| || | | ||||| || || | |||| |||||| | || | Sbjct 23258 ATGCCCTCCTTGTCCTGGA--TCTTTGTCTTGACATTGTCGATGGTGTCTGAAGATTCAA 23201 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| | || ||||||||||| || || || || |||||||| Sbjct 23200 CCTCGAGGGTGATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 23152 Score = 109 bits (120), Expect = 5e-19 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| |||||||| || || |||||||| || | ||| || || ||| Sbjct 18441 ACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCTTCG 18500 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGT 118648 ||||| || || ||| ||||||||||||| || || || || |||||||| |||| ||| Sbjct 18501 AGCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCCGGGGGAATGCCCTCTTTGTCCTGG 18560 Query 118649 AATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 | | || || || || | || | |||||| | ||||| |||| || | ||| | Sbjct 18561 A--TCTTGGTCTTGACATTGTCAATGGTGTCTGAAGATTCGACTTCGAGCGTGATCGTCT 18618 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||||| || || || || |||||||| Sbjct 18619 TGCCAGTCAGGGTCTTGACGAAGATCTGCAT 18649 >seq2456 Length=10261 Score = 129 bits (142), Expect = 5e-25 Identities = 147/194 (76%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||||||| || || ||||||||||||||||| || | Sbjct 1129 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCGAGCTGTTTTCCGGCAAA 1188 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGT-TTAACC 118664 |||||| |||||||| || || || || |||||||||| ||| | | || || || || Sbjct 1189 GATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGA--TCTTGGTCTTGACG 1246 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | |||| |||||| | | ||| ||||||| ||| | ||| |||||||| || || || Sbjct 1247 TTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTG 1306 Query 118725 ACAAAAATCTGCAT 118738 || || |||||||| Sbjct 1307 ACGAAGATCTGCAT 1320 >seq580 Length=47424 Score = 118 bits (130), Expect = 9e-22 Identities = 156/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| || | |||||| ||||| Sbjct 27744 CACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTC 27685 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TG 118647 |||||| || || ||| |||||||||||||||| || || || || ||||||||||| || Sbjct 27684 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTG 27625 Query 118648 TAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 | | || || || || | |||| ||||| | ||| ||||||| ||| | ||| Sbjct 27624 GA--TCTTGGTCTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATCGTC 27567 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || |||||||||||| Sbjct 27566 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATG 27534 >seq2269 Length=80277 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || || | ||| | || || || || || |||||||| || Sbjct 52645 ACCGCCGCGCAGACGCAGGACGAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCCGA 52586 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || || || || |||||||| || || || ||||||||||||| || || ||||| Sbjct 52585 CAGCGTTCGGCCGTCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCCGGAGG 52526 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||||||||||||| || || || || | || | ||||| | ||| || Sbjct 52525 GATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATCGTGTCGGATGACTCCAC 52466 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||| | ||| ||||| || ||||| || ||||| ||||||||| Sbjct 52465 CTCGAGGGTGATCGTCTTGCCTGTGAGAGTCTTCACAAAGATCTGCATG 52417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433815130254496