Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2399 95.1 3e-14 seq2115 89.7 1e-12 >seq2399 Length=11591 Score = 95.1 bits (104), Expect = 3e-14 Identities = 333/517 (64%), Gaps = 5/517 (1%) Strand=Plus/Plus Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 || || ||| | |||||||| || ||||| |||||| | ||||| || | || Sbjct 3259 CAACATATGCTCATGCGAGTCGCCGTCGGCATTCACGGGCGGGACATTGACCAGGCCATC 3318 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 || || |||| | ||| || | | || || ||| | || || |||||||| Sbjct 3319 GACACTTACAACCTCATGTCGGAGAAGTACTTCACCCACGCCTCGCCCACCCTCTTCAAT 3378 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 ||||| || ||| ||| || || ||||| || | | ||| | || ||||| Sbjct 3379 GCCGGAACACCCAATCCCCAGATGTCATCCTGCTTCCTGGTCACGATGAAGGATGACTCC 3438 Query 249073 GTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGG 249131 |||||||||| || ||||| || || || || | | ||| || || || || Sbjct 3439 ATCGACGGCATCTACGACACCCTCAAGACTTGCGCC-ATGATCAGCAAGACGGCCGGTGG 3497 Query 249132 AATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGG 249191 ||||| ||| | | | |||||||| | || || ||||| || || || || Sbjct 3498 CATCGGGCTCAACATTCACTGCATCCGAGGCACCGGCTCTTACATTGCTGGAACCAACGG 3557 Query 249192 GGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAA 249251 ||| | || || || ||| | |||||| ||| | |||||| | | | || | Sbjct 3558 CGTCTCCAACGGCATTGTTCCCATGCTTCGAGTCTTCAACAACACCGCTCGCTACGTCGA 3617 Query 249252 CCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGA 249308 ||||| || | ||| |||| | || ||||| || | || |||||| | || Sbjct 3618 CCAGGGTGGCAACAAGCGACCGGGGGCTTTTGCCATCTACATTGAGCCTTGGCACTCGGA 3677 Query 249309 TATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGA 249368 | || |||||||| ||| | | |||||| ||||||| ||| | | || ||||| Sbjct 3678 CGTCTTCGAGTTCCTCGACCTCAGGAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGTGA 3737 Query 249369 CCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 |||||||||| ||| ||| | |||||||||||||| Sbjct 3738 GCTCTTCTACGCCCTTTGGATTCCCGACTTGTTCATG 3774 >seq2115 Length=27374 Score = 89.7 bits (98), Expect = 1e-12 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| ||| |||| || |||||||||||||| || |||||||| || || ||||| Sbjct 1908 TGCTCTTCTACGGCGGCCCAGGAACAGGCAAGACATCCACCATCCTCGCCCTCGCCCGCC 1849 Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAAC 254130 || || ||| || | | | ||||| |||||||| ||||| || ||||| | Sbjct 1848 AACTCTTCGGCCCGGACCTCTTCCGCTCCCGCGTCCTCGAGCTCAACGCCTCCGACGAGC 1789 Query 254131 GCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATG 254177 |||| | |||||||||||| |||||||||| || ||||| || Sbjct 1788 GCGGCATCTCCGTCGTCCGCGAGAAGATCAAGAACTTTGCCAAGTTG 1742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073726667958784