Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2456 127 2e-24 seq2114 120 2e-22 >seq2456 Length=10261 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || |||||||||||||| |||||||||||| |||| || |||| || Sbjct 1112 ACCAGATGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCGTCCGTCCTCG 1171 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||||||||| || || | |||||| ||||| || || | |||||||||||| Sbjct 1172 AGCTGTTTTCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGG 1231 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||||||||| | ||| ||||||||| Sbjct 1232 ATCTTGGTCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATCGTCTTG 1291 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || ||||| || ||||| ||||| ||| Sbjct 1292 CCGGTGAGGGTCTTGACGAAGATCTGCATCTTG 1324 >seq2114 Length=91084 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| || |||| |||| || Sbjct 23132 ACCAAGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCA 23073 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| || | || |||||||| || || | |||||||||||| Sbjct 23072 AGCTGCTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGG 23013 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | |||| | ||| ||||| | ||| || |||||| Sbjct 23012 ATCTTTGTCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCGAGGGTGATGGTCTTG 22953 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| || ||||| ||||| Sbjct 22952 CCGGTCAGCGTCTTGACGAAGATCTGCAT 22924 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| || |||||||||||| || |||| |||| || Sbjct 18669 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTGCGACCGTCCTCA 18728 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || |||| || |||||||| ||||| | |||||||||||| Sbjct 18729 AGCTGCTTGCCGGCAAAGATCAGACGTTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 18788 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||| ||||| | |||||| |||||| Sbjct 18789 ATCTTGGTCTTGACATTGTCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATGGTCTTG 18848 Query 45308 CCCGTCAGAGTCTTCAC 45324 || || |||||||| || Sbjct 18849 CCAGTAAGAGTCTTAAC 18865 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||||||||||||||| || ||| |||| || Sbjct 18213 ACCAAGTGGAGTGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCA 18272 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || ||||| || | ||||||||||| || || | ||||||||||| Sbjct 18273 AGTTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCTTGG 18332 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| || ||||| | ||| || |||||| Sbjct 18333 ATCTTCGTCTTTACGTTGTCGATTGTGTCCGATGATTCAACCTCGAGGGTGATGGTCTTG 18392 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| || ||||| ||||| Sbjct 18393 CCGGTCAGGGTCTTGACGAAGATCTGCAT 18421 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||| || ||||||||||| || || |||| || Sbjct 23360 ACCAAGTGGAGTGTCGACTCCTTTTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCTTCA 23301 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || ||||| ||||||||||| || || | |||||||||||| Sbjct 23300 AGCTGCTTGCCGGCAAAGATCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 23241 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | |||| | || ||||| | ||| || |||||| Sbjct 23240 ATCTTTGTCTTGACATTGTCGATGGTGTCTGAAGATTCAACCTCGAGGGTGATGGTCTTG 23181 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| || ||||| ||||| Sbjct 23180 CCGGTCAGCGTCTTGACGAAGATCTGCAT 23152 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||| || |||||||||||| || ||| | || || Sbjct 22904 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCA 22845 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| || | ||||||||||| ||||| | ||||||||||||| Sbjct 22844 AGCTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGG 22785 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || ||| ||||| | ||| || |||||| Sbjct 22784 ATCTTGGTCTTGACGTTGTCGATGGTATCTGAGGACTCGACCTCGAGGGTGATGGTCTTG 22725 Query 45308 CCCGTCAGAGTCTTCAC 45324 || || |||||||| || Sbjct 22724 CCGGTAAGAGTCTTAAC 22708 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| ||||| ||||||||| ||||||||||| || || |||| || Sbjct 18441 ACCAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCTTCG 18500 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | ||||||||||| || || | ||||| |||||| Sbjct 18501 AGCTGCTTGCCGGCGAAGATGAGACGCTGTTGGTCCGGGGGAATGCCCTCTTTGTCCTGG 18560 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | || || || | || ||||||||| Sbjct 18561 ATCTTGGTCTTGACATTGTCAATGGTGTCTGAAGATTCGACTTCGAGCGTGATCGTCTTG 18620 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| || ||||| ||||| Sbjct 18621 CCAGTCAGGGTCTTGACGAAGATCTGCAT 18649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395061294340648